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Cluster: Rep_77_CGC58

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_77_c_59 Rep_77_c_59_20 29276 29887 + 3.A.1.12.5
NULL(UNKNOWN) Rep_77_c_59 Rep_77_c_59_21 29921 31135 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_77_c_59 Rep_77_c_59_22 31534 33933 + 3.A.10.3.4
STP Rep_77_c_59 Rep_77_c_59_23 34264 34830 + Sigma70_r2 | Sigma70_r4_2
STP Rep_77_c_59 Rep_77_c_59_24 34881 36092 + FecR
TC Rep_77_c_59 Rep_77_c_59_25 36242 39679 + 1.B.14.6.1
pfam Rep_77_c_59 Rep_77_c_59_26 39695 41530 + SusD_RagB | SusD-like_3
CAZyme Rep_77_c_59 Rep_77_c_59_27 41801 44515 + GH2
Gene ID: Rep_77_c_59_20
Type: TC
Location: 29276 - 29887 (+)
Gene ID: Rep_77_c_59_21
Type:
Location: 29921 - 31135 (+)
Gene ID: Rep_77_c_59_22
Type: TC
Location: 31534 - 33933 (+)
Gene ID: Rep_77_c_59_23
Type: STP
Location: 34264 - 34830 (+)
Gene ID: Rep_77_c_59_24
Type: STP
Location: 34881 - 36092 (+)
Gene ID: Rep_77_c_59_25
Type: TC
Location: 36242 - 39679 (+)
Gene ID: Rep_77_c_59_26
Type: pfam
Location: 39695 - 41530 (+)
Gene ID: Rep_77_c_59_27
Type: CAZyme
Location: 41801 - 44515 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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