Cluster: Rep_77_CGC43
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_77
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_77_c_47 | Rep_77_c_47_104 | 125228 | 128293 | + | 1.B.14.6.1 |
| TC | Rep_77_c_47 | Rep_77_c_47_105 | 128322 | 129785 | + | 8.A.46.1.3 |
| CAZyme | Rep_77_c_47 | Rep_77_c_47_106 | 129884 | 132211 | + | GH3 |
| pfam | Rep_77_c_47 | Rep_77_c_47_107 | 132228 | 133100 | + | Exo_endo_phos |
| CAZyme | Rep_77_c_47 | Rep_77_c_47_108 | 133193 | 134533 | + | GH144 |
Gene ID: Rep_77_c_47_104
Type: TC
Location: 125228 - 128293 (+)
Type: TC
Location: 125228 - 128293 (+)
Gene ID: Rep_77_c_47_105
Type: TC
Location: 128322 - 129785 (+)
Type: TC
Location: 128322 - 129785 (+)
Gene ID: Rep_77_c_47_106
Type: CAZyme
Location: 129884 - 132211 (+)
Type: CAZyme
Location: 129884 - 132211 (+)
Gene ID: Rep_77_c_47_107
Type: pfam
Location: 132228 - 133100 (+)
Type: pfam
Location: 132228 - 133100 (+)
Gene ID: Rep_77_c_47_108
Type: CAZyme
Location: 133193 - 134533 (+)
Type: CAZyme
Location: 133193 - 134533 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp007896885
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_77_c_47_104 | vegan > omnivore | 1.45795 | 0.04047 |
| Rep_77_c_47_105 | vegan > omnivore | 1.17630 | 0.04047 |