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Cluster: Rep_77_CGC41

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_77_c_47 Rep_77_c_47_65 61252 61935 - 3.A.1.125.1
TC Rep_77_c_47 Rep_77_c_47_66 61967 64102 - 2.A.37.2.5
pfam Rep_77_c_47 Rep_77_c_47_67 64322 65329 + Semialdhyde_dh | Semialdhyde_dhC
pfam Rep_77_c_47 Rep_77_c_47_68 65596 67326 - SusD_RagB | SusD-like_3
TC Rep_77_c_47 Rep_77_c_47_69 67358 70747 - 1.B.14.6.1
NULL(UNKNOWN) Rep_77_c_47 Rep_77_c_47_70 71124 71972 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_77_c_47 Rep_77_c_47_71 72522 73688 + GH171
TC Rep_77_c_47 Rep_77_c_47_72 73862 75322 + 2.A.21.3.7
NULL(UNKNOWN) Rep_77_c_47 Rep_77_c_47_73 75332 78457 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_77_c_47 Rep_77_c_47_74 78478 80430 + Metallophos | PQQ | PQQ | PQQ_2 | PQQ_2 | PQQ_2 | Beta-prop_ACSF4 | Beta-prop_ACSF4 | Beta-prop_ACSF4
CAZyme Rep_77_c_47 Rep_77_c_47_75 80531 82009 + GT2
Gene ID: Rep_77_c_47_65
Type: TC
Location: 61252 - 61935 (-)
Gene ID: Rep_77_c_47_66
Type: TC
Location: 61967 - 64102 (-)
Gene ID: Rep_77_c_47_67
Type: pfam
Location: 64322 - 65329 (+)
Gene ID: Rep_77_c_47_68
Type: pfam
Location: 65596 - 67326 (-)
Gene ID: Rep_77_c_47_69
Type: TC
Location: 67358 - 70747 (-)
Gene ID: Rep_77_c_47_70
Type:
Location: 71124 - 71972 (-)
Gene ID: Rep_77_c_47_71
Type: CAZyme
Location: 72522 - 73688 (+)
Gene ID: Rep_77_c_47_72
Type: TC
Location: 73862 - 75322 (+)
Gene ID: Rep_77_c_47_73
Type:
Location: 75332 - 78457 (+)
Gene ID: Rep_77_c_47_74
Type: pfam
Location: 78478 - 80430 (+)
Gene ID: Rep_77_c_47_75
Type: CAZyme
Location: 80531 - 82009 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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