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Cluster: Rep_77_CGC37

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_77_c_42 Rep_77_c_42_48 59177 62482 + 1.B.14.6.1
pfam Rep_77_c_42 Rep_77_c_42_49 62493 63974 + SusD_RagB | SusD-like_3
CAZyme Rep_77_c_42 Rep_77_c_42_50 64135 67146 + GH55_3
CAZyme Rep_77_c_42 Rep_77_c_42_51 67158 69113 + GH50
pfam Rep_77_c_42 Rep_77_c_42_52 69291 69908 - DUF386
pfam Rep_77_c_42 Rep_77_c_42_53 70012 71145 + Radical_SAM | HemN_C
TC Rep_77_c_42 Rep_77_c_42_54 71150 71449 + 2.A.124.1.2
TC Rep_77_c_42 Rep_77_c_42_55 71439 72041 + 2.A.124.1.2
Gene ID: Rep_77_c_42_48
Type: TC
Location: 59177 - 62482 (+)
Gene ID: Rep_77_c_42_49
Type: pfam
Location: 62493 - 63974 (+)
Gene ID: Rep_77_c_42_50
Type: CAZyme
Location: 64135 - 67146 (+)
Gene ID: Rep_77_c_42_51
Type: CAZyme
Location: 67158 - 69113 (+)
Gene ID: Rep_77_c_42_52
Type: pfam
Location: 69291 - 69908 (-)
Gene ID: Rep_77_c_42_53
Type: pfam
Location: 70012 - 71145 (+)
Gene ID: Rep_77_c_42_54
Type: TC
Location: 71150 - 71449 (+)
Gene ID: Rep_77_c_42_55
Type: TC
Location: 71439 - 72041 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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