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Cluster: Rep_77_CGC35

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_77_c_40 Rep_77_c_40_2 1153 2328 + GT2
TC Rep_77_c_40 Rep_77_c_40_3 2359 3603 - 3.A.1.125.1
STP Rep_77_c_40 Rep_77_c_40_4 3655 4911 - Aminotran_1_2
NULL(UNKNOWN) Rep_77_c_40 Rep_77_c_40_5 5122 6357 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_77_c_40 Rep_77_c_40_6 6540 8693 - GH97
CAZyme Rep_77_c_40 Rep_77_c_40_7 8729 10240 - GH27
CAZyme Rep_77_c_40 Rep_77_c_40_8 10285 11625 - GH27
pfam Rep_77_c_40 Rep_77_c_40_9 11653 12114 - SusF_SusE
pfam Rep_77_c_40 Rep_77_c_40_10 12152 13885 - SusD_RagB | SusD-like_3
TC Rep_77_c_40 Rep_77_c_40_11 13916 16936 - 1.B.14.6.1
Gene ID: Rep_77_c_40_2
Type: CAZyme
Location: 1153 - 2328 (+)
Gene ID: Rep_77_c_40_3
Type: TC
Location: 2359 - 3603 (-)
Gene ID: Rep_77_c_40_4
Type: STP
Location: 3655 - 4911 (-)
Gene ID: Rep_77_c_40_5
Type:
Location: 5122 - 6357 (+)
Gene ID: Rep_77_c_40_6
Type: CAZyme
Location: 6540 - 8693 (-)
Gene ID: Rep_77_c_40_7
Type: CAZyme
Location: 8729 - 10240 (-)
Gene ID: Rep_77_c_40_8
Type: CAZyme
Location: 10285 - 11625 (-)
Gene ID: Rep_77_c_40_9
Type: pfam
Location: 11653 - 12114 (-)
Gene ID: Rep_77_c_40_10
Type: pfam
Location: 12152 - 13885 (-)
Gene ID: Rep_77_c_40_11
Type: TC
Location: 13916 - 16936 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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