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Cluster: Rep_77_CGC27

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_77_c_25 Rep_77_c_25_108 149668 150912 + GH5_46
CAZyme Rep_77_c_25 Rep_77_c_25_109 150934 153162 + GH3
pfam Rep_77_c_25 Rep_77_c_25_110 153843 155021 - AP_endonuc_2 | UxuA
pfam Rep_77_c_25 Rep_77_c_25_111 155035 155844 - adh_short | KR | adh_short_C2
CAZyme Rep_77_c_25 Rep_77_c_25_112 155950 158424 - GH2
CAZyme Rep_77_c_25 Rep_77_c_25_113 158426 160723 - GH88 | PL38
CAZyme Rep_77_c_25 Rep_77_c_25_114 160771 163473 - CBM57 | GH2
NULL(UNKNOWN) Rep_77_c_25 Rep_77_c_25_115 163531 164076 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_77_c_25 Rep_77_c_25_116 164098 165750 - 8.A.46.1.4
TC Rep_77_c_25 Rep_77_c_25_117 165763 168885 - 1.B.14.6.1
Gene ID: Rep_77_c_25_108
Type: CAZyme
Location: 149668 - 150912 (+)
Gene ID: Rep_77_c_25_109
Type: CAZyme
Location: 150934 - 153162 (+)
Gene ID: Rep_77_c_25_110
Type: pfam
Location: 153843 - 155021 (-)
Gene ID: Rep_77_c_25_111
Type: pfam
Location: 155035 - 155844 (-)
Gene ID: Rep_77_c_25_112
Type: CAZyme
Location: 155950 - 158424 (-)
Gene ID: Rep_77_c_25_113
Type: CAZyme
Location: 158426 - 160723 (-)
Gene ID: Rep_77_c_25_114
Type: CAZyme
Location: 160771 - 163473 (-)
Gene ID: Rep_77_c_25_115
Type:
Location: 163531 - 164076 (-)
Gene ID: Rep_77_c_25_116
Type: TC
Location: 164098 - 165750 (-)
Gene ID: Rep_77_c_25_117
Type: TC
Location: 165763 - 168885 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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