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Cluster: Rep_77_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_77_c_25 Rep_77_c_25_25 26153 27055 - 2.A.115.1.5
pfam Rep_77_c_25 Rep_77_c_25_26 27064 29901 - tRNA-synt_1 | Anticodon_1 | tRNA-synt_1g | tRNA-synt_1_2
TC Rep_77_c_25 Rep_77_c_25_27 30048 30926 + 2.A.7.3.32
TC Rep_77_c_25 Rep_77_c_25_28 30940 32274 + 2.A.66.1.32
pfam Rep_77_c_25 Rep_77_c_25_29 32431 35046 + MutS_V | MutS_I | MutS_II | MutS_IV | MutS_III
NULL(UNKNOWN) Rep_77_c_25 Rep_77_c_25_30 35159 35248 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_77_c_25 Rep_77_c_25_31 35267 37399 - GH3
NULL(UNKNOWN) Rep_77_c_25 Rep_77_c_25_32 37464 37556 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_77_c_25 Rep_77_c_25_33 37521 39863 - GH31_3
Gene ID: Rep_77_c_25_25
Type: TC
Location: 26153 - 27055 (-)
Gene ID: Rep_77_c_25_26
Type: pfam
Location: 27064 - 29901 (-)
Gene ID: Rep_77_c_25_27
Type: TC
Location: 30048 - 30926 (+)
Gene ID: Rep_77_c_25_28
Type: TC
Location: 30940 - 32274 (+)
Gene ID: Rep_77_c_25_29
Type: pfam
Location: 32431 - 35046 (+)
Gene ID: Rep_77_c_25_30
Type:
Location: 35159 - 35248 (-)
Gene ID: Rep_77_c_25_31
Type: CAZyme
Location: 35267 - 37399 (-)
Gene ID: Rep_77_c_25_32
Type:
Location: 37464 - 37556 (+)
Gene ID: Rep_77_c_25_33
Type: CAZyme
Location: 37521 - 39863 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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