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Cluster: Rep_77_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_77_c_18 Rep_77_c_18_249 323915 326242 - GH65
TC Rep_77_c_18 Rep_77_c_18_250 326394 327845 - 2.A.2.6.2
TF Rep_77_c_18 Rep_77_c_18_251 327899 328906 - LacI
CAZyme Rep_77_c_18 Rep_77_c_18_252 329051 330217 + GH53
CAZyme Rep_77_c_18 Rep_77_c_18_253 330254 332728 + GH2
CAZyme Rep_77_c_18 Rep_77_c_18_254 332995 335304 - GH13
NULL(UNKNOWN) Rep_77_c_18 Rep_77_c_18_255 335435 335551 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_77_c_18 Rep_77_c_18_256 335577 338597 + 1.B.14.6.1
TC Rep_77_c_18 Rep_77_c_18_257 338617 340272 + 8.A.46.1.1
Gene ID: Rep_77_c_18_249
Type: CAZyme
Location: 323915 - 326242 (-)
Gene ID: Rep_77_c_18_250
Type: TC
Location: 326394 - 327845 (-)
Gene ID: Rep_77_c_18_251
Type: TF
Location: 327899 - 328906 (-)
Gene ID: Rep_77_c_18_252
Type: CAZyme
Location: 329051 - 330217 (+)
Gene ID: Rep_77_c_18_253
Type: CAZyme
Location: 330254 - 332728 (+)
Gene ID: Rep_77_c_18_254
Type: CAZyme
Location: 332995 - 335304 (-)
Gene ID: Rep_77_c_18_255
Type:
Location: 335435 - 335551 (-)
Gene ID: Rep_77_c_18_256
Type: TC
Location: 335577 - 338597 (+)
Gene ID: Rep_77_c_18_257
Type: TC
Location: 338617 - 340272 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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