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Cluster: Rep_77_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_77_c_16 Rep_77_c_16_59 55947 58361 + 1.B.14.6.11
TF Rep_77_c_16 Rep_77_c_16_60 58525 62562 - HTH_AraC
CAZyme Rep_77_c_16 Rep_77_c_16_61 62995 64938 + GH97
CAZyme Rep_77_c_16 Rep_77_c_16_62 64956 67115 + GH67
sulfatase Rep_77_c_16 Rep_77_c_16_63 67112 68458 + S1_14
TC Rep_77_c_16 Rep_77_c_16_64 68497 71646 + 1.B.14.6.1
TC Rep_77_c_16 Rep_77_c_16_65 71658 73448 + 8.A.46.1.6
CAZyme Rep_77_c_16 Rep_77_c_16_66 73578 76742 + GH2
pfam Rep_77_c_16 Rep_77_c_16_67 77004 78059 - DHQ_synthase | DHQS_C
TC Rep_77_c_16 Rep_77_c_16_68 78385 81330 + 1.C.105.2.12
Gene ID: Rep_77_c_16_59
Type: TC
Location: 55947 - 58361 (+)
Gene ID: Rep_77_c_16_60
Type: TF
Location: 58525 - 62562 (-)
Gene ID: Rep_77_c_16_61
Type: CAZyme
Location: 62995 - 64938 (+)
Gene ID: Rep_77_c_16_62
Type: CAZyme
Location: 64956 - 67115 (+)
Gene ID: Rep_77_c_16_63
Type: sulfatase
Location: 67112 - 68458 (+)
Gene ID: Rep_77_c_16_64
Type: TC
Location: 68497 - 71646 (+)
Gene ID: Rep_77_c_16_65
Type: TC
Location: 71658 - 73448 (+)
Gene ID: Rep_77_c_16_66
Type: CAZyme
Location: 73578 - 76742 (+)
Gene ID: Rep_77_c_16_67
Type: pfam
Location: 77004 - 78059 (-)
Gene ID: Rep_77_c_16_68
Type: TC
Location: 78385 - 81330 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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