Cluster: Rep_77_CGC1
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_77
- CGC Family ID: CGCFAM_00003
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_77_c_0 | Rep_77_c_0_29 | 33156 | 33893 | + | GT2 |
| TC | Rep_77_c_0 | Rep_77_c_0_30 | 33901 | 34545 | + | 2.A.123.4.1 |
| CAZyme | Rep_77_c_0 | Rep_77_c_0_31 | 34526 | 36070 | + | GT83 |
| pfam | Rep_77_c_0 | Rep_77_c_0_32 | 36086 | 37114 | + | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd |
| pfam | Rep_77_c_0 | Rep_77_c_0_33 | 37104 | 37955 | - | PHP |
| TC | Rep_77_c_0 | Rep_77_c_0_34 | 37972 | 39849 | - | 3.A.1.120.6 |
Gene ID: Rep_77_c_0_29
Type: CAZyme
Location: 33156 - 33893 (+)
Type: CAZyme
Location: 33156 - 33893 (+)
Gene ID: Rep_77_c_0_30
Type: TC
Location: 33901 - 34545 (+)
Type: TC
Location: 33901 - 34545 (+)
Gene ID: Rep_77_c_0_31
Type: CAZyme
Location: 34526 - 36070 (+)
Type: CAZyme
Location: 34526 - 36070 (+)
Gene ID: Rep_77_c_0_32
Type: pfam
Location: 36086 - 37114 (+)
Type: pfam
Location: 36086 - 37114 (+)
Gene ID: Rep_77_c_0_33
Type: pfam
Location: 37104 - 37955 (-)
Type: pfam
Location: 37104 - 37955 (-)
Gene ID: Rep_77_c_0_34
Type: TC
Location: 37972 - 39849 (-)
Type: TC
Location: 37972 - 39849 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp007896885
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.