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Cluster: Rep_777_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_777_c_0 Rep_777_c_0_1209 1220092 1221411 - GH103
TC Rep_777_c_0 Rep_777_c_0_1210 1221566 1222954 + 2.A.1.1.106
TF Rep_777_c_0 Rep_777_c_0_1211 1223359 1223901 + HTH_3
TC Rep_777_c_0 Rep_777_c_0_1212 1224014 1224589 - 3.D.6.1.2
TC Rep_777_c_0 Rep_777_c_0_1213 1224591 1225187 - 3.D.6.1.2
TC Rep_777_c_0 Rep_777_c_0_1214 1225180 1225773 - 3.D.6.1.3
TC Rep_777_c_0 Rep_777_c_0_1215 1225776 1226753 - 3.D.6.1.2
TC Rep_777_c_0 Rep_777_c_0_1216 1226756 1228087 - 3.D.6.1.2
Gene ID: Rep_777_c_0_1209
Type: CAZyme
Location: 1220092 - 1221411 (-)
Gene ID: Rep_777_c_0_1210
Type: TC
Location: 1221566 - 1222954 (+)
Gene ID: Rep_777_c_0_1211
Type: TF
Location: 1223359 - 1223901 (+)
Gene ID: Rep_777_c_0_1212
Type: TC
Location: 1224014 - 1224589 (-)
Gene ID: Rep_777_c_0_1213
Type: TC
Location: 1224591 - 1225187 (-)
Gene ID: Rep_777_c_0_1214
Type: TC
Location: 1225180 - 1225773 (-)
Gene ID: Rep_777_c_0_1215
Type: TC
Location: 1225776 - 1226753 (-)
Gene ID: Rep_777_c_0_1216
Type: TC
Location: 1226756 - 1228087 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Pseudomonadota
→
Class
Alphaproteobacteria
→
Order
RF32
→
Family
CAG-239
→
Genus
HGM16780
→
Species
HGM16780 sp900538765

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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