Cluster: Rep_777_CGC11
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_777
- CGC Family ID: CGCFAM_10359
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_777_c_0 | Rep_777_c_0_1786 | 1845330 | 1846328 | + | 1.A.35.4.1 |
| TC | Rep_777_c_0 | Rep_777_c_0_1787 | 1846325 | 1847548 | - | 9.B.156.3.1 |
| NULL(UNKNOWN) | Rep_777_c_0 | Rep_777_c_0_1788 | 1847557 | 1848654 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_777_c_0 | Rep_777_c_0_1789 | 1848823 | 1849293 | + | AhpC-TSA |
| TC | Rep_777_c_0 | Rep_777_c_0_1790 | 1849290 | 1851044 | - | 3.A.1.210.3 |
| pfam | Rep_777_c_0 | Rep_777_c_0_1791 | 1851188 | 1852129 | + | Ldh_1_N | Ldh_1_C |
| CAZyme | Rep_777_c_0 | Rep_777_c_0_1792 | 1852126 | 1852875 | - | GT2 |
Gene ID: Rep_777_c_0_1786
Type: TC
Location: 1845330 - 1846328 (+)
Type: TC
Location: 1845330 - 1846328 (+)
Gene ID: Rep_777_c_0_1787
Type: TC
Location: 1846325 - 1847548 (-)
Type: TC
Location: 1846325 - 1847548 (-)
Gene ID: Rep_777_c_0_1788
Type:
Location: 1847557 - 1848654 (-)
Type:
Location: 1847557 - 1848654 (-)
Gene ID: Rep_777_c_0_1789
Type: pfam
Location: 1848823 - 1849293 (+)
Type: pfam
Location: 1848823 - 1849293 (+)
Gene ID: Rep_777_c_0_1790
Type: TC
Location: 1849290 - 1851044 (-)
Type: TC
Location: 1849290 - 1851044 (-)
Gene ID: Rep_777_c_0_1791
Type: pfam
Location: 1851188 - 1852129 (+)
Type: pfam
Location: 1851188 - 1852129 (+)
Gene ID: Rep_777_c_0_1792
Type: CAZyme
Location: 1852126 - 1852875 (-)
Type: CAZyme
Location: 1852126 - 1852875 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
RF32
Family
CAG-239
Genus
HGM16780
Species
HGM16780 sp900538765
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.