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Cluster: Rep_770_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_770_c_65 Rep_770_c_65_2 6910 10020 - 2.A.6.2.15
TC Rep_770_c_65 Rep_770_c_65_3 10024 11187 - 2.A.6.2.4
STP Rep_770_c_65 Rep_770_c_65_4 11188 11808 - TetR_N
pfam Rep_770_c_65 Rep_770_c_65_5 11938 12579 - Hydrolase | HAD_2
CAZyme Rep_770_c_65 Rep_770_c_65_6 12581 14719 - GH77
CAZyme Rep_770_c_65 Rep_770_c_65_7 14731 16809 - GH13_11
CAZyme Rep_770_c_65 Rep_770_c_65_8 16827 19019 - CBM48 | GH13_9
pfam Rep_770_c_65 Rep_770_c_65_9 19242 19493 + DUF2934
pfam Rep_770_c_65 Rep_770_c_65_10 19553 20857 - Methyltransf_11 | Methyltransf_12 | TPR_16 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31
TC Rep_770_c_65 Rep_770_c_65_11 20934 22259 + 2.A.66.1.28
Gene ID: Rep_770_c_65_2
Type: TC
Location: 6910 - 10020 (-)
Gene ID: Rep_770_c_65_3
Type: TC
Location: 10024 - 11187 (-)
Gene ID: Rep_770_c_65_4
Type: STP
Location: 11188 - 11808 (-)
Gene ID: Rep_770_c_65_5
Type: pfam
Location: 11938 - 12579 (-)
Gene ID: Rep_770_c_65_6
Type: CAZyme
Location: 12581 - 14719 (-)
Gene ID: Rep_770_c_65_7
Type: CAZyme
Location: 14731 - 16809 (-)
Gene ID: Rep_770_c_65_8
Type: CAZyme
Location: 16827 - 19019 (-)
Gene ID: Rep_770_c_65_9
Type: pfam
Location: 19242 - 19493 (+)
Gene ID: Rep_770_c_65_10
Type: pfam
Location: 19553 - 20857 (-)
Gene ID: Rep_770_c_65_11
Type: TC
Location: 20934 - 22259 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Pseudomonadota
→
Class
Alphaproteobacteria
→
Order
RF32
→
Family
CAG-239
→
Genus
CAZU01
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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