Cluster: Rep_76_CGC27
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 7
- Substrate: pectin
- Genome ID: Rep_76
- CGC Family ID: CGCFAM_01075
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_76_c_6 | Rep_76_c_6_37 | 35952 | 37247 | - | CE7 |
| TC | Rep_76_c_6 | Rep_76_c_6_38 | 37357 | 38751 | - | 2.A.2.3.6 |
| CAZyme | Rep_76_c_6 | Rep_76_c_6_39 | 38775 | 39941 | - | GH130_1 |
| CAZyme | Rep_76_c_6 | Rep_76_c_6_40 | 39970 | 41343 | - | GH140 |
| CAZyme | Rep_76_c_6 | Rep_76_c_6_41 | 41364 | 43592 | - | GH2 |
| CAZyme | Rep_76_c_6 | Rep_76_c_6_42 | 43765 | 44790 | - | GH5_2 |
| CAZyme | Rep_76_c_6 | Rep_76_c_6_43 | 44897 | 45940 | - | GH5_5 |
| CAZyme | Rep_76_c_6 | Rep_76_c_6_44 | 46091 | 47194 | - | GH5_5 |
| pfam | Rep_76_c_6 | Rep_76_c_6_45 | 47293 | 48534 | - | TIG | SGBP_B_XBD |
| pfam | Rep_76_c_6 | Rep_76_c_6_46 | 48555 | 50321 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_76_c_6 | Rep_76_c_6_47 | 50341 | 53640 | - | 1.B.14.6.1 |
| TF | Rep_76_c_6 | Rep_76_c_6_48 | 54011 | 54895 | - | HTH_AraC |
| pfam | Rep_76_c_6 | Rep_76_c_6_49 | 54972 | 56471 | - | Fucose_iso_C | Arabinose_Iso_C |
| TC | Rep_76_c_6 | Rep_76_c_6_50 | 56517 | 57845 | - | 2.A.1.8.11 |
Gene ID: Rep_76_c_6_37
Type: CAZyme
Location: 35952 - 37247 (-)
Type: CAZyme
Location: 35952 - 37247 (-)
Gene ID: Rep_76_c_6_38
Type: TC
Location: 37357 - 38751 (-)
Type: TC
Location: 37357 - 38751 (-)
Gene ID: Rep_76_c_6_39
Type: CAZyme
Location: 38775 - 39941 (-)
Type: CAZyme
Location: 38775 - 39941 (-)
Gene ID: Rep_76_c_6_40
Type: CAZyme
Location: 39970 - 41343 (-)
Type: CAZyme
Location: 39970 - 41343 (-)
Gene ID: Rep_76_c_6_41
Type: CAZyme
Location: 41364 - 43592 (-)
Type: CAZyme
Location: 41364 - 43592 (-)
Gene ID: Rep_76_c_6_42
Type: CAZyme
Location: 43765 - 44790 (-)
Type: CAZyme
Location: 43765 - 44790 (-)
Gene ID: Rep_76_c_6_43
Type: CAZyme
Location: 44897 - 45940 (-)
Type: CAZyme
Location: 44897 - 45940 (-)
Gene ID: Rep_76_c_6_44
Type: CAZyme
Location: 46091 - 47194 (-)
Type: CAZyme
Location: 46091 - 47194 (-)
Gene ID: Rep_76_c_6_45
Type: pfam
Location: 47293 - 48534 (-)
Type: pfam
Location: 47293 - 48534 (-)
Gene ID: Rep_76_c_6_46
Type: pfam
Location: 48555 - 50321 (-)
Type: pfam
Location: 48555 - 50321 (-)
Gene ID: Rep_76_c_6_47
Type: TC
Location: 50341 - 53640 (-)
Type: TC
Location: 50341 - 53640 (-)
Gene ID: Rep_76_c_6_48
Type: TF
Location: 54011 - 54895 (-)
Type: TF
Location: 54011 - 54895 (-)
Gene ID: Rep_76_c_6_49
Type: pfam
Location: 54972 - 56471 (-)
Type: pfam
Location: 54972 - 56471 (-)
Gene ID: Rep_76_c_6_50
Type: TC
Location: 56517 - 57845 (-)
Type: TC
Location: 56517 - 57845 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Dysgonomonadaceae
Genus
Dysgonomonas
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.