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Cluster: Rep_739_CGC53

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_739_c_15 Rep_739_c_15_664 784690 785589 - 3.B.1.1.5
pfam Rep_739_c_15 Rep_739_c_15_665 785740 786339 - DZR_2
pfam Rep_739_c_15 Rep_739_c_15_666 786349 787362 - Semialdhyde_dh | Semialdhyde_dhC
CAZyme Rep_739_c_15 Rep_739_c_15_667 787651 789918 + GH2
pfam Rep_739_c_15 Rep_739_c_15_668 790056 791327 + GARS_A | GARS_C | GARS_N
CAZyme Rep_739_c_15 Rep_739_c_15_669 791334 792491 + GT4
pfam Rep_739_c_15 Rep_739_c_15_670 792470 793288 + NAD_synthase
TC Rep_739_c_15 Rep_739_c_15_671 793424 794740 + 9.A.40.2.2
TC Rep_739_c_15 Rep_739_c_15_672 794822 797425 - 3.A.3.2.22
Gene ID: Rep_739_c_15_664
Type: TC
Location: 784690 - 785589 (-)
Gene ID: Rep_739_c_15_665
Type: pfam
Location: 785740 - 786339 (-)
Gene ID: Rep_739_c_15_666
Type: pfam
Location: 786349 - 787362 (-)
Gene ID: Rep_739_c_15_667
Type: CAZyme
Location: 787651 - 789918 (+)
Gene ID: Rep_739_c_15_668
Type: pfam
Location: 790056 - 791327 (+)
Gene ID: Rep_739_c_15_669
Type: CAZyme
Location: 791334 - 792491 (+)
Gene ID: Rep_739_c_15_670
Type: pfam
Location: 792470 - 793288 (+)
Gene ID: Rep_739_c_15_671
Type: TC
Location: 793424 - 794740 (+)
Gene ID: Rep_739_c_15_672
Type: TC
Location: 794822 - 797425 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_739_c_15_664 vegetarian > vegan 1.05038 0.03761

🧭 Explore Read Mapping of CGC

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