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Cluster: Rep_739_CGC50

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_739_c_15 Rep_739_c_15_393 467038 468867 - 3.A.18.1.1
CAZyme Rep_739_c_15 Rep_739_c_15_394 469226 470878 - GT83
pfam Rep_739_c_15 Rep_739_c_15_395 470899 471531 - DUF2062
NULL(UNKNOWN) Rep_739_c_15 Rep_739_c_15_396 471963 472469 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_739_c_15 Rep_739_c_15_397 472493 473407 + 3.A.1.15.13
TC Rep_739_c_15 Rep_739_c_15_398 473404 474207 + 3.A.1.15.5
TC Rep_739_c_15 Rep_739_c_15_399 474209 475072 + 3.A.1.15.5
TF Rep_739_c_15 Rep_739_c_15_400 475119 476294 - LacI
pfam Rep_739_c_15 Rep_739_c_15_401 476368 477687 - PhoH | AAA_22 | PIN_4
CAZyme Rep_739_c_15 Rep_739_c_15_402 477847 479370 - GH20
Gene ID: Rep_739_c_15_393
Type: TC
Location: 467038 - 468867 (-)
Gene ID: Rep_739_c_15_394
Type: CAZyme
Location: 469226 - 470878 (-)
Gene ID: Rep_739_c_15_395
Type: pfam
Location: 470899 - 471531 (-)
Gene ID: Rep_739_c_15_396
Type:
Location: 471963 - 472469 (+)
Gene ID: Rep_739_c_15_397
Type: TC
Location: 472493 - 473407 (+)
Gene ID: Rep_739_c_15_398
Type: TC
Location: 473404 - 474207 (+)
Gene ID: Rep_739_c_15_399
Type: TC
Location: 474209 - 475072 (+)
Gene ID: Rep_739_c_15_400
Type: TF
Location: 475119 - 476294 (-)
Gene ID: Rep_739_c_15_401
Type: pfam
Location: 476368 - 477687 (-)
Gene ID: Rep_739_c_15_402
Type: CAZyme
Location: 477847 - 479370 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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