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Cluster: Rep_729_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_729_c_13 Rep_729_c_13_34 35691 37544 + GT83
CAZyme Rep_729_c_13 Rep_729_c_13_35 37541 38509 + GT2
pfam Rep_729_c_13 Rep_729_c_13_36 38781 41987 + MGS | ATP-grasp | ATP-grasp | CPSase_L_D2 | CPSase_L_D2 | CPSase_L_D3 | Dala_Dala_lig_C
STP Rep_729_c_13 Rep_729_c_13_37 42023 43444 + GAF | SpoIIE
CAZyme Rep_729_c_13 Rep_729_c_13_38 43574 44926 - GH4
TF Rep_729_c_13 Rep_729_c_13_39 45123 46004 + HTH_AraC | HTH_AraC
TC Rep_729_c_13 Rep_729_c_13_40 46116 47153 + 3.A.1.7.1
TC Rep_729_c_13 Rep_729_c_13_41 47164 48105 + 3.A.1.7.1
TC Rep_729_c_13 Rep_729_c_13_42 48107 48982 + 3.A.1.7.1
TC Rep_729_c_13 Rep_729_c_13_43 48972 49742 + 3.A.1.7.1
Gene ID: Rep_729_c_13_34
Type: CAZyme
Location: 35691 - 37544 (+)
Gene ID: Rep_729_c_13_35
Type: CAZyme
Location: 37541 - 38509 (+)
Gene ID: Rep_729_c_13_36
Type: pfam
Location: 38781 - 41987 (+)
Gene ID: Rep_729_c_13_37
Type: STP
Location: 42023 - 43444 (+)
Gene ID: Rep_729_c_13_38
Type: CAZyme
Location: 43574 - 44926 (-)
Gene ID: Rep_729_c_13_39
Type: TF
Location: 45123 - 46004 (+)
Gene ID: Rep_729_c_13_40
Type: TC
Location: 46116 - 47153 (+)
Gene ID: Rep_729_c_13_41
Type: TC
Location: 47164 - 48105 (+)
Gene ID: Rep_729_c_13_42
Type: TC
Location: 48107 - 48982 (+)
Gene ID: Rep_729_c_13_43
Type: TC
Location: 48972 - 49742 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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