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Cluster: Rep_729_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_729_c_7 Rep_729_c_7_24 24930 26552 + 2.A.21.8.3
pfam Rep_729_c_7 Rep_729_c_7_25 26549 27133 + Sua5_yciO_yrdC
pfam Rep_729_c_7 Rep_729_c_7_26 27145 27573 - RHS_repeat | RHS_repeat
CAZyme Rep_729_c_7 Rep_729_c_7_27 27570 29012 - GH51
TF Rep_729_c_7 Rep_729_c_7_28 29141 29974 - HTH_AraC
CAZyme Rep_729_c_7 Rep_729_c_7_29 29978 33049 - GH106
pfam Rep_729_c_7 Rep_729_c_7_30 33090 34760 - BPD_transp_1 | BPD_transp_1
TC Rep_729_c_7 Rep_729_c_7_31 34761 36344 - 3.A.1.20.2
TC Rep_729_c_7 Rep_729_c_7_32 36358 37533 - 3.A.1.11.3
Gene ID: Rep_729_c_7_24
Type: TC
Location: 24930 - 26552 (+)
Gene ID: Rep_729_c_7_25
Type: pfam
Location: 26549 - 27133 (+)
Gene ID: Rep_729_c_7_26
Type: pfam
Location: 27145 - 27573 (-)
Gene ID: Rep_729_c_7_27
Type: CAZyme
Location: 27570 - 29012 (-)
Gene ID: Rep_729_c_7_28
Type: TF
Location: 29141 - 29974 (-)
Gene ID: Rep_729_c_7_29
Type: CAZyme
Location: 29978 - 33049 (-)
Gene ID: Rep_729_c_7_30
Type: pfam
Location: 33090 - 34760 (-)
Gene ID: Rep_729_c_7_31
Type: TC
Location: 34761 - 36344 (-)
Gene ID: Rep_729_c_7_32
Type: TC
Location: 36358 - 37533 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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