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Cluster: Rep_728_CGC27

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_728_c_125 Rep_728_c_125_3 1975 4515 + 2.A.6.4.3
TC Rep_728_c_125 Rep_728_c_125_4 4515 6962 + 2.A.58.2.2
pfam Rep_728_c_125 Rep_728_c_125_5 7056 7715 + ThuA
NULL(UNKNOWN) Rep_728_c_125 Rep_728_c_125_6 7739 9019 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_728_c_125 Rep_728_c_125_7 9042 10379 + CE7
NULL(UNKNOWN) Rep_728_c_125 Rep_728_c_125_8 10389 10733 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_728_c_125 Rep_728_c_125_9 10752 12056 - FAD_binding_2 | GIDA | Thi4 | Pyr_redox_2 | FAD_oxidored | NAD_binding_8
CAZyme Rep_728_c_125 Rep_728_c_125_10 12053 14302 - GH39
CAZyme Rep_728_c_125 Rep_728_c_125_11 14321 16540 - CBM9
TF Rep_728_c_125 Rep_728_c_125_12 16733 17041 + HTH_AraC
TC Rep_728_c_125 Rep_728_c_125_13 17179 18273 + 9.B.146.1.3
Gene ID: Rep_728_c_125_3
Type: TC
Location: 1975 - 4515 (+)
Gene ID: Rep_728_c_125_4
Type: TC
Location: 4515 - 6962 (+)
Gene ID: Rep_728_c_125_5
Type: pfam
Location: 7056 - 7715 (+)
Gene ID: Rep_728_c_125_6
Type:
Location: 7739 - 9019 (+)
Gene ID: Rep_728_c_125_7
Type: CAZyme
Location: 9042 - 10379 (+)
Gene ID: Rep_728_c_125_8
Type:
Location: 10389 - 10733 (+)
Gene ID: Rep_728_c_125_9
Type: pfam
Location: 10752 - 12056 (-)
Gene ID: Rep_728_c_125_10
Type: CAZyme
Location: 12053 - 14302 (-)
Gene ID: Rep_728_c_125_11
Type: CAZyme
Location: 14321 - 16540 (-)
Gene ID: Rep_728_c_125_12
Type: TF
Location: 16733 - 17041 (+)
Gene ID: Rep_728_c_125_13
Type: TC
Location: 17179 - 18273 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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