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Cluster: Rep_728_CGC25

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_728_c_106 Rep_728_c_106_7 6874 7644 - 3.A.1.7.1
TC Rep_728_c_106 Rep_728_c_106_8 7634 8509 - 3.A.1.7.1
TC Rep_728_c_106 Rep_728_c_106_9 8511 9452 - 3.A.1.7.1
TC Rep_728_c_106 Rep_728_c_106_10 9463 10500 - 3.A.1.7.1
TF Rep_728_c_106 Rep_728_c_106_11 10612 11493 - HTH_AraC | HTH_AraC
CAZyme Rep_728_c_106 Rep_728_c_106_12 11688 13040 + GH4
STP Rep_728_c_106 Rep_728_c_106_13 13158 14582 - GAF | SpoIIE
pfam Rep_728_c_106 Rep_728_c_106_14 14618 17824 - MGS | ATP-grasp | ATP-grasp | CPSase_L_D2 | CPSase_L_D2 | CPSase_L_D3 | Dala_Dala_lig_C
CAZyme Rep_728_c_106 Rep_728_c_106_15 18108 19076 - GT2
CAZyme Rep_728_c_106 Rep_728_c_106_16 19063 20922 - GT83
Gene ID: Rep_728_c_106_7
Type: TC
Location: 6874 - 7644 (-)
Gene ID: Rep_728_c_106_8
Type: TC
Location: 7634 - 8509 (-)
Gene ID: Rep_728_c_106_9
Type: TC
Location: 8511 - 9452 (-)
Gene ID: Rep_728_c_106_10
Type: TC
Location: 9463 - 10500 (-)
Gene ID: Rep_728_c_106_11
Type: TF
Location: 10612 - 11493 (-)
Gene ID: Rep_728_c_106_12
Type: CAZyme
Location: 11688 - 13040 (+)
Gene ID: Rep_728_c_106_13
Type: STP
Location: 13158 - 14582 (-)
Gene ID: Rep_728_c_106_14
Type: pfam
Location: 14618 - 17824 (-)
Gene ID: Rep_728_c_106_15
Type: CAZyme
Location: 18108 - 19076 (-)
Gene ID: Rep_728_c_106_16
Type: CAZyme
Location: 19063 - 20922 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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