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Cluster: Rep_728_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_728_c_96 Rep_728_c_96_38 46873 48363 - GH10
pfam Rep_728_c_96 Rep_728_c_96_39 48380 49339 - AP_endonuc_2 | UxuA | UxuA
CAZyme Rep_728_c_96 Rep_728_c_96_40 49336 50319 - GH113
pfam Rep_728_c_96 Rep_728_c_96_41 50338 51657 - MR_MLE_N | MR_MLE_C
TF Rep_728_c_96 Rep_728_c_96_42 51679 52431 - MarR
CAZyme Rep_728_c_96 Rep_728_c_96_43 52557 53600 - GT4
pfam Rep_728_c_96 Rep_728_c_96_44 53864 54205 + P-II
TC Rep_728_c_96 Rep_728_c_96_45 54235 55578 + 1.A.11.2.5
NULL(UNKNOWN) Rep_728_c_96 Rep_728_c_96_46 55806 56231 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_728_c_96 Rep_728_c_96_47 56432 57031 + VWA
TC Rep_728_c_96 Rep_728_c_96_48 57108 58013 - 1.B.48.3.3
Gene ID: Rep_728_c_96_38
Type: CAZyme
Location: 46873 - 48363 (-)
Gene ID: Rep_728_c_96_39
Type: pfam
Location: 48380 - 49339 (-)
Gene ID: Rep_728_c_96_40
Type: CAZyme
Location: 49336 - 50319 (-)
Gene ID: Rep_728_c_96_41
Type: pfam
Location: 50338 - 51657 (-)
Gene ID: Rep_728_c_96_42
Type: TF
Location: 51679 - 52431 (-)
Gene ID: Rep_728_c_96_43
Type: CAZyme
Location: 52557 - 53600 (-)
Gene ID: Rep_728_c_96_44
Type: pfam
Location: 53864 - 54205 (+)
Gene ID: Rep_728_c_96_45
Type: TC
Location: 54235 - 55578 (+)
Gene ID: Rep_728_c_96_46
Type:
Location: 55806 - 56231 (+)
Gene ID: Rep_728_c_96_47
Type: pfam
Location: 56432 - 57031 (+)
Gene ID: Rep_728_c_96_48
Type: TC
Location: 57108 - 58013 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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