Cluster: Rep_728_CGC22
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_728
- CGC Family ID: CGCFAM_11303
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_728_c_75 | Rep_728_c_75_1 | 800 | 3271 | - | GH39 |
| TF | Rep_728_c_75 | Rep_728_c_75_2 | 3634 | 4395 | + | HTH_AraC |
| TC | Rep_728_c_75 | Rep_728_c_75_3 | 4539 | 5576 | + | 3.A.1.11.3 |
| TC | Rep_728_c_75 | Rep_728_c_75_4 | 5590 | 7173 | + | 3.A.1.20.2 |
| TC | Rep_728_c_75 | Rep_728_c_75_5 | 7174 | 8844 | + | 3.A.1.19.3 |
| CAZyme | Rep_728_c_75 | Rep_728_c_75_6 | 8891 | 11962 | + | GH106 |
| TF | Rep_728_c_75 | Rep_728_c_75_7 | 11966 | 12787 | + | HTH_AraC |
| CAZyme | Rep_728_c_75 | Rep_728_c_75_8 | 13015 | 14511 | + | GH51 |
| NULL(UNKNOWN) | Rep_728_c_75 | Rep_728_c_75_9 | 14508 | 14936 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_728_c_75 | Rep_728_c_75_10 | 14962 | 15546 | - | Sua5_yciO_yrdC |
| TC | Rep_728_c_75 | Rep_728_c_75_11 | 15543 | 17165 | - | 2.A.21.8.3 |
| pfam | Rep_728_c_75 | Rep_728_c_75_12 | 17360 | 18289 | + | LYTB |
| NULL(UNKNOWN) | Rep_728_c_75 | Rep_728_c_75_13 | 18286 | 18864 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_728_c_75 | Rep_728_c_75_14 | 19102 | 20601 | + | 2.A.114.1.6 |
Gene ID: Rep_728_c_75_1
Type: CAZyme
Location: 800 - 3271 (-)
Type: CAZyme
Location: 800 - 3271 (-)
Gene ID: Rep_728_c_75_2
Type: TF
Location: 3634 - 4395 (+)
Type: TF
Location: 3634 - 4395 (+)
Gene ID: Rep_728_c_75_3
Type: TC
Location: 4539 - 5576 (+)
Type: TC
Location: 4539 - 5576 (+)
Gene ID: Rep_728_c_75_4
Type: TC
Location: 5590 - 7173 (+)
Type: TC
Location: 5590 - 7173 (+)
Gene ID: Rep_728_c_75_5
Type: TC
Location: 7174 - 8844 (+)
Type: TC
Location: 7174 - 8844 (+)
Gene ID: Rep_728_c_75_6
Type: CAZyme
Location: 8891 - 11962 (+)
Type: CAZyme
Location: 8891 - 11962 (+)
Gene ID: Rep_728_c_75_7
Type: TF
Location: 11966 - 12787 (+)
Type: TF
Location: 11966 - 12787 (+)
Gene ID: Rep_728_c_75_8
Type: CAZyme
Location: 13015 - 14511 (+)
Type: CAZyme
Location: 13015 - 14511 (+)
Gene ID: Rep_728_c_75_9
Type:
Location: 14508 - 14936 (+)
Type:
Location: 14508 - 14936 (+)
Gene ID: Rep_728_c_75_10
Type: pfam
Location: 14962 - 15546 (-)
Type: pfam
Location: 14962 - 15546 (-)
Gene ID: Rep_728_c_75_11
Type: TC
Location: 15543 - 17165 (-)
Type: TC
Location: 15543 - 17165 (-)
Gene ID: Rep_728_c_75_12
Type: pfam
Location: 17360 - 18289 (+)
Type: pfam
Location: 17360 - 18289 (+)
Gene ID: Rep_728_c_75_13
Type:
Location: 18286 - 18864 (+)
Type:
Location: 18286 - 18864 (+)
Gene ID: Rep_728_c_75_14
Type: TC
Location: 19102 - 20601 (+)
Type: TC
Location: 19102 - 20601 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Lentisphaeria
Order
Victivallales
Family
Victivallaceae
Genus
Victivallis
Species
Victivallis sp944389935
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.