Cluster: Rep_726_CGC36
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_726
- CGC Family ID: CGCFAM_01384
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_726_c_185 | Rep_726_c_185_14 | 15955 | 17106 | + | 2.A.1.26.1 |
| NULL(UNKNOWN) | Rep_726_c_185 | Rep_726_c_185_15 | 17126 | 18082 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | Rep_726_c_185 | Rep_726_c_185_16 | 18087 | 19229 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_726_c_185 | Rep_726_c_185_17 | 19452 | 21824 | + | GH95 |
| NULL(UNKNOWN) | Rep_726_c_185 | Rep_726_c_185_18 | 22014 | 22535 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_726_c_185 | Rep_726_c_185_19 | 22754 | 24199 | - | GH109 |
| NULL(UNKNOWN) | Rep_726_c_185 | Rep_726_c_185_20 | 24678 | 25286 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_726_c_185 | Rep_726_c_185_21 | 25399 | 26688 | - | 1.I.1.1.3 |
| TC | Rep_726_c_185 | Rep_726_c_185_22 | 27192 | 27800 | - | 4.F.1.1.8 |
| pfam | Rep_726_c_185 | Rep_726_c_185_23 | 27933 | 30317 | - | BRCT | DNA_ligase_aden | DNA_ligase_ZBD | DNA_ligase_OB | PTCB-BRCT | Nlig-Ia |
| CAZyme | Rep_726_c_185 | Rep_726_c_185_24 | 30342 | 31958 | - | GH29 |
Gene ID: Rep_726_c_185_14
Type: TC
Location: 15955 - 17106 (+)
Type: TC
Location: 15955 - 17106 (+)
Gene ID: Rep_726_c_185_15
Type:
Location: 17126 - 18082 (-)
Type:
Location: 17126 - 18082 (-)
Gene ID: Rep_726_c_185_16
Type:
Location: 18087 - 19229 (-)
Type:
Location: 18087 - 19229 (-)
Gene ID: Rep_726_c_185_17
Type: CAZyme
Location: 19452 - 21824 (+)
Type: CAZyme
Location: 19452 - 21824 (+)
Gene ID: Rep_726_c_185_18
Type:
Location: 22014 - 22535 (-)
Type:
Location: 22014 - 22535 (-)
Gene ID: Rep_726_c_185_19
Type: CAZyme
Location: 22754 - 24199 (-)
Type: CAZyme
Location: 22754 - 24199 (-)
Gene ID: Rep_726_c_185_20
Type:
Location: 24678 - 25286 (-)
Type:
Location: 24678 - 25286 (-)
Gene ID: Rep_726_c_185_21
Type: TC
Location: 25399 - 26688 (-)
Type: TC
Location: 25399 - 26688 (-)
Gene ID: Rep_726_c_185_22
Type: TC
Location: 27192 - 27800 (-)
Type: TC
Location: 27192 - 27800 (-)
Gene ID: Rep_726_c_185_23
Type: pfam
Location: 27933 - 30317 (-)
Type: pfam
Location: 27933 - 30317 (-)
Gene ID: Rep_726_c_185_24
Type: CAZyme
Location: 30342 - 31958 (-)
Type: CAZyme
Location: 30342 - 31958 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.