Cluster: Rep_726_CGC30
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_726
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_726_c_168 | Rep_726_c_168_10 | 10034 | 12007 | - | GH97 |
| pfam | Rep_726_c_168 | Rep_726_c_168_11 | 12081 | 15257 | - | DEAD | Helicase_C | CarD_TRCF_RID | TRCF | ResIII | UvrB_inter |
| pfam | Rep_726_c_168 | Rep_726_c_168_12 | 15375 | 16556 | - | SHD1 |
| TC | Rep_726_c_168 | Rep_726_c_168_13 | 16589 | 19141 | - | 2.A.1.49.7 |
Gene ID: Rep_726_c_168_10
Type: CAZyme
Location: 10034 - 12007 (-)
Type: CAZyme
Location: 10034 - 12007 (-)
Gene ID: Rep_726_c_168_11
Type: pfam
Location: 12081 - 15257 (-)
Type: pfam
Location: 12081 - 15257 (-)
Gene ID: Rep_726_c_168_12
Type: pfam
Location: 15375 - 16556 (-)
Type: pfam
Location: 15375 - 16556 (-)
Gene ID: Rep_726_c_168_13
Type: TC
Location: 16589 - 19141 (-)
Type: TC
Location: 16589 - 19141 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_726_c_168_12 | vegetarian > vegan | 1.00024 | 0.00251 |