Cluster: Rep_726_CGC17
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_726
- CGC Family ID: CGCFAM_02551
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_726_c_79 | Rep_726_c_79_1 | 2 | 607 | + | 3.A.1.120.6 |
| TC | Rep_726_c_79 | Rep_726_c_79_2 | 870 | 1805 | - | 2.A.7.3.36 |
| STP | Rep_726_c_79 | Rep_726_c_79_3 | 1802 | 2146 | - | AraC_binding |
| pfam | Rep_726_c_79 | Rep_726_c_79_4 | 2152 | 3567 | - | tRNA-synt_1e | DALR_2 | CysS_C |
| CAZyme | Rep_726_c_79 | Rep_726_c_79_5 | 3691 | 5247 | - | GH20 |
Gene ID: Rep_726_c_79_1
Type: TC
Location: 2 - 607 (+)
Type: TC
Location: 2 - 607 (+)
Gene ID: Rep_726_c_79_2
Type: TC
Location: 870 - 1805 (-)
Type: TC
Location: 870 - 1805 (-)
Gene ID: Rep_726_c_79_3
Type: STP
Location: 1802 - 2146 (-)
Type: STP
Location: 1802 - 2146 (-)
Gene ID: Rep_726_c_79_4
Type: pfam
Location: 2152 - 3567 (-)
Type: pfam
Location: 2152 - 3567 (-)
Gene ID: Rep_726_c_79_5
Type: CAZyme
Location: 3691 - 5247 (-)
Type: CAZyme
Location: 3691 - 5247 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_726_c_79_3 | vegetarian > vegan | 1.17164 | 0.00251 |