Cluster: Rep_725_CGC7
🧬 Cluster Details
- Gene Count: 23
- CAZyme Count: 13
- Substrate:
- Genome ID: Rep_725
- CGC Family ID: CGCFAM_00894
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_725_c_7 | Rep_725_c_7_51 | 49456 | 50523 | - | GT2 |
| CAZyme | Rep_725_c_7 | Rep_725_c_7_52 | 50528 | 51700 | - | GT4 |
| CAZyme | Rep_725_c_7 | Rep_725_c_7_53 | 51697 | 52599 | - | GT2 |
| CAZyme | Rep_725_c_7 | Rep_725_c_7_54 | 52596 | 53693 | - | GT4 |
| CAZyme | Rep_725_c_7 | Rep_725_c_7_55 | 53711 | 54751 | - | GT2 |
| CAZyme | Rep_725_c_7 | Rep_725_c_7_56 | 54748 | 55881 | - | GT4 |
| CAZyme | Rep_725_c_7 | Rep_725_c_7_57 | 55883 | 57076 | - | GT4 |
| NULL(UNKNOWN) | Rep_725_c_7 | Rep_725_c_7_58 | 57067 | 58581 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_725_c_7 | Rep_725_c_7_59 | 58578 | 59768 | - | GH105 |
| pfam | Rep_725_c_7 | Rep_725_c_7_60 | 59765 | 60931 | - | PS_pyruv_trans |
| CAZyme | Rep_725_c_7 | Rep_725_c_7_61 | 60943 | 61950 | - | GT2 |
| CAZyme | Rep_725_c_7 | Rep_725_c_7_62 | 61957 | 63108 | - | GT4 |
| CAZyme | Rep_725_c_7 | Rep_725_c_7_63 | 63105 | 64238 | - | GT4 |
| TC | Rep_725_c_7 | Rep_725_c_7_64 | 64260 | 66644 | - | 8.A.3.3.4 |
| TC | Rep_725_c_7 | Rep_725_c_7_65 | 66649 | 67434 | - | 1.B.18.3.8 |
| TC | Rep_725_c_7 | Rep_725_c_7_66 | 67455 | 69452 | - | 9.B.18.2.1 |
| pfam | Rep_725_c_7 | Rep_725_c_7_67 | 69471 | 71258 | - | DegT_DnrJ_EryC1 | Beta_elim_lyase | PglD_N |
| TC | Rep_725_c_7 | Rep_725_c_7_68 | 71255 | 71866 | - | 9.B.18.1.1 |
| CAZyme | Rep_725_c_7 | Rep_725_c_7_69 | 71863 | 72981 | - | GT4 |
| pfam | Rep_725_c_7 | Rep_725_c_7_70 | 72978 | 74108 | - | EpsG |
| CAZyme | Rep_725_c_7 | Rep_725_c_7_71 | 74530 | 75600 | + | GT2 |
| TC | Rep_725_c_7 | Rep_725_c_7_72 | 75758 | 77242 | + | 3.A.1.3.17 |
| TC | Rep_725_c_7 | Rep_725_c_7_73 | 77235 | 77984 | + | 3.A.1.3.15 |
Gene ID: Rep_725_c_7_51
Type: CAZyme
Location: 49456 - 50523 (-)
Type: CAZyme
Location: 49456 - 50523 (-)
Gene ID: Rep_725_c_7_52
Type: CAZyme
Location: 50528 - 51700 (-)
Type: CAZyme
Location: 50528 - 51700 (-)
Gene ID: Rep_725_c_7_53
Type: CAZyme
Location: 51697 - 52599 (-)
Type: CAZyme
Location: 51697 - 52599 (-)
Gene ID: Rep_725_c_7_54
Type: CAZyme
Location: 52596 - 53693 (-)
Type: CAZyme
Location: 52596 - 53693 (-)
Gene ID: Rep_725_c_7_55
Type: CAZyme
Location: 53711 - 54751 (-)
Type: CAZyme
Location: 53711 - 54751 (-)
Gene ID: Rep_725_c_7_56
Type: CAZyme
Location: 54748 - 55881 (-)
Type: CAZyme
Location: 54748 - 55881 (-)
Gene ID: Rep_725_c_7_57
Type: CAZyme
Location: 55883 - 57076 (-)
Type: CAZyme
Location: 55883 - 57076 (-)
Gene ID: Rep_725_c_7_58
Type:
Location: 57067 - 58581 (-)
Type:
Location: 57067 - 58581 (-)
Gene ID: Rep_725_c_7_59
Type: CAZyme
Location: 58578 - 59768 (-)
Type: CAZyme
Location: 58578 - 59768 (-)
Gene ID: Rep_725_c_7_60
Type: pfam
Location: 59765 - 60931 (-)
Type: pfam
Location: 59765 - 60931 (-)
Gene ID: Rep_725_c_7_61
Type: CAZyme
Location: 60943 - 61950 (-)
Type: CAZyme
Location: 60943 - 61950 (-)
Gene ID: Rep_725_c_7_62
Type: CAZyme
Location: 61957 - 63108 (-)
Type: CAZyme
Location: 61957 - 63108 (-)
Gene ID: Rep_725_c_7_63
Type: CAZyme
Location: 63105 - 64238 (-)
Type: CAZyme
Location: 63105 - 64238 (-)
Gene ID: Rep_725_c_7_64
Type: TC
Location: 64260 - 66644 (-)
Type: TC
Location: 64260 - 66644 (-)
Gene ID: Rep_725_c_7_65
Type: TC
Location: 66649 - 67434 (-)
Type: TC
Location: 66649 - 67434 (-)
Gene ID: Rep_725_c_7_66
Type: TC
Location: 67455 - 69452 (-)
Type: TC
Location: 67455 - 69452 (-)
Gene ID: Rep_725_c_7_67
Type: pfam
Location: 69471 - 71258 (-)
Type: pfam
Location: 69471 - 71258 (-)
Gene ID: Rep_725_c_7_68
Type: TC
Location: 71255 - 71866 (-)
Type: TC
Location: 71255 - 71866 (-)
Gene ID: Rep_725_c_7_69
Type: CAZyme
Location: 71863 - 72981 (-)
Type: CAZyme
Location: 71863 - 72981 (-)
Gene ID: Rep_725_c_7_70
Type: pfam
Location: 72978 - 74108 (-)
Type: pfam
Location: 72978 - 74108 (-)
Gene ID: Rep_725_c_7_71
Type: CAZyme
Location: 74530 - 75600 (+)
Type: CAZyme
Location: 74530 - 75600 (+)
Gene ID: Rep_725_c_7_72
Type: TC
Location: 75758 - 77242 (+)
Type: TC
Location: 75758 - 77242 (+)
Gene ID: Rep_725_c_7_73
Type: TC
Location: 77235 - 77984 (+)
Type: TC
Location: 77235 - 77984 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.