Cluster: Rep_725_CGC39
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_725
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_725_c_55 | Rep_725_c_55_57 | 58125 | 59228 | + | 9.B.146.1.3 |
| pfam | Rep_725_c_55 | Rep_725_c_55_58 | 59240 | 60550 | + | Mur_ligase_C | Mur_ligase_M | NAD_binding_8 | MurD-like_N |
| pfam | Rep_725_c_55 | Rep_725_c_55_59 | 60574 | 61380 | + | LysM | LysM |
| TC | Rep_725_c_55 | Rep_725_c_55_60 | 61409 | 62551 | + | 2.A.103.1.1 |
| CAZyme | Rep_725_c_55 | Rep_725_c_55_61 | 62548 | 63672 | + | GT28 |
Gene ID: Rep_725_c_55_57
Type: TC
Location: 58125 - 59228 (+)
Type: TC
Location: 58125 - 59228 (+)
Gene ID: Rep_725_c_55_58
Type: pfam
Location: 59240 - 60550 (+)
Type: pfam
Location: 59240 - 60550 (+)
Gene ID: Rep_725_c_55_59
Type: pfam
Location: 60574 - 61380 (+)
Type: pfam
Location: 60574 - 61380 (+)
Gene ID: Rep_725_c_55_60
Type: TC
Location: 61409 - 62551 (+)
Type: TC
Location: 61409 - 62551 (+)
Gene ID: Rep_725_c_55_61
Type: CAZyme
Location: 62548 - 63672 (+)
Type: CAZyme
Location: 62548 - 63672 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.