Cluster: Rep_725_CGC34
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_725
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_725_c_50 | Rep_725_c_50_92 | 104372 | 105928 | + | GH20 |
| pfam | Rep_725_c_50 | Rep_725_c_50_93 | 106048 | 107463 | + | tRNA-synt_1e | DALR_2 | CysS_C |
| STP | Rep_725_c_50 | Rep_725_c_50_94 | 107469 | 107813 | + | AraC_binding |
| TC | Rep_725_c_50 | Rep_725_c_50_95 | 107810 | 108697 | + | 2.A.7.3.36 |
| TC | Rep_725_c_50 | Rep_725_c_50_96 | 108747 | 110723 | - | 3.A.1.121.4 |
| TC | Rep_725_c_50 | Rep_725_c_50_97 | 110805 | 111308 | - | 3.D.1.8.1 |
Gene ID: Rep_725_c_50_92
Type: CAZyme
Location: 104372 - 105928 (+)
Type: CAZyme
Location: 104372 - 105928 (+)
Gene ID: Rep_725_c_50_93
Type: pfam
Location: 106048 - 107463 (+)
Type: pfam
Location: 106048 - 107463 (+)
Gene ID: Rep_725_c_50_94
Type: STP
Location: 107469 - 107813 (+)
Type: STP
Location: 107469 - 107813 (+)
Gene ID: Rep_725_c_50_95
Type: TC
Location: 107810 - 108697 (+)
Type: TC
Location: 107810 - 108697 (+)
Gene ID: Rep_725_c_50_96
Type: TC
Location: 108747 - 110723 (-)
Type: TC
Location: 108747 - 110723 (-)
Gene ID: Rep_725_c_50_97
Type: TC
Location: 110805 - 111308 (-)
Type: TC
Location: 110805 - 111308 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_725_c_50_95 | vegetarian > omnivore | 1.86946 | 0.04808 |