Cluster: Rep_725_CGC28
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_725
- CGC Family ID: CGCFAM_04764
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_725_c_42 | Rep_725_c_42_3 | 2090 | 3703 | - | 2.A.111.2.1 |
| CAZyme | Rep_725_c_42 | Rep_725_c_42_4 | 3898 | 5364 | + | CE4 |
| TC | Rep_725_c_42 | Rep_725_c_42_5 | 5824 | 7068 | + | 3.D.1.5.1 |
| TC | Rep_725_c_42 | Rep_725_c_42_6 | 7118 | 7699 | + | 3.D.1.3.1 |
| TC | Rep_725_c_42 | Rep_725_c_42_7 | 7729 | 9129 | + | 3.D.1.3.1 |
| TC | Rep_725_c_42 | Rep_725_c_42_8 | 9181 | 10917 | + | 3.D.1.6.3 |
| TC | Rep_725_c_42 | Rep_725_c_42_9 | 10953 | 12221 | + | 3.D.1.5.1 |
| STP | Rep_725_c_42 | Rep_725_c_42_10 | 12252 | 12815 | + | Fer4 | Fer4 |
| TC | Rep_725_c_42 | Rep_725_c_42_11 | 12852 | 13676 | + | 3.D.1.1.1 |
| TC | Rep_725_c_42 | Rep_725_c_42_12 | 13704 | 14021 | + | 3.D.1.3.1 |
| TC | Rep_725_c_42 | Rep_725_c_42_13 | 14045 | 15877 | + | 3.D.1.3.1 |
| TC | Rep_725_c_42 | Rep_725_c_42_14 | 15899 | 17323 | + | 3.D.1.5.1 |
| TC | Rep_725_c_42 | Rep_725_c_42_15 | 17369 | 18751 | + | 3.D.1.5.1 |
Gene ID: Rep_725_c_42_3
Type: TC
Location: 2090 - 3703 (-)
Type: TC
Location: 2090 - 3703 (-)
Gene ID: Rep_725_c_42_4
Type: CAZyme
Location: 3898 - 5364 (+)
Type: CAZyme
Location: 3898 - 5364 (+)
Gene ID: Rep_725_c_42_5
Type: TC
Location: 5824 - 7068 (+)
Type: TC
Location: 5824 - 7068 (+)
Gene ID: Rep_725_c_42_6
Type: TC
Location: 7118 - 7699 (+)
Type: TC
Location: 7118 - 7699 (+)
Gene ID: Rep_725_c_42_7
Type: TC
Location: 7729 - 9129 (+)
Type: TC
Location: 7729 - 9129 (+)
Gene ID: Rep_725_c_42_8
Type: TC
Location: 9181 - 10917 (+)
Type: TC
Location: 9181 - 10917 (+)
Gene ID: Rep_725_c_42_9
Type: TC
Location: 10953 - 12221 (+)
Type: TC
Location: 10953 - 12221 (+)
Gene ID: Rep_725_c_42_10
Type: STP
Location: 12252 - 12815 (+)
Type: STP
Location: 12252 - 12815 (+)
Gene ID: Rep_725_c_42_11
Type: TC
Location: 12852 - 13676 (+)
Type: TC
Location: 12852 - 13676 (+)
Gene ID: Rep_725_c_42_12
Type: TC
Location: 13704 - 14021 (+)
Type: TC
Location: 13704 - 14021 (+)
Gene ID: Rep_725_c_42_13
Type: TC
Location: 14045 - 15877 (+)
Type: TC
Location: 14045 - 15877 (+)
Gene ID: Rep_725_c_42_14
Type: TC
Location: 15899 - 17323 (+)
Type: TC
Location: 15899 - 17323 (+)
Gene ID: Rep_725_c_42_15
Type: TC
Location: 17369 - 18751 (+)
Type: TC
Location: 17369 - 18751 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_725_c_42_12 | vegetarian > omnivore | 1.24383 | 0.03604 |