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Cluster: Rep_725_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_725_c_0 Rep_725_c_0_92 102322 102888 + 2.A.51.1.6
pfam Rep_725_c_0 Rep_725_c_0_93 103207 104187 + adh_short | KR | adh_short_C2 | SDR
TC Rep_725_c_0 Rep_725_c_0_94 104332 106398 - 9.A.8.1.5
STP Rep_725_c_0 Rep_725_c_0_95 106479 106703 - FeoA
TF Rep_725_c_0 Rep_725_c_0_96 106731 107387 - Fe_dep_repress
CAZyme Rep_725_c_0 Rep_725_c_0_97 107579 108604 + PL38
TC Rep_725_c_0 Rep_725_c_0_98 108665 109993 - 2.A.1.7.11
Gene ID: Rep_725_c_0_92
Type: TC
Location: 102322 - 102888 (+)
Gene ID: Rep_725_c_0_93
Type: pfam
Location: 103207 - 104187 (+)
Gene ID: Rep_725_c_0_94
Type: TC
Location: 104332 - 106398 (-)
Gene ID: Rep_725_c_0_95
Type: STP
Location: 106479 - 106703 (-)
Gene ID: Rep_725_c_0_96
Type: TF
Location: 106731 - 107387 (-)
Gene ID: Rep_725_c_0_97
Type: CAZyme
Location: 107579 - 108604 (+)
Gene ID: Rep_725_c_0_98
Type: TC
Location: 108665 - 109993 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_725_c_0_93 vegan > omnivore 1.81531 0.02613
Rep_725_c_0_93 vegetarian > omnivore 2.27479 0.03604

🧭 Explore Read Mapping of CGC

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