Cluster: Rep_725_CGC18
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 6
- Substrate:
- Genome ID: Rep_725
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_725_c_27 | Rep_725_c_27_2 | 347 | 1393 | - | GT8 |
| NULL(UNKNOWN) | Rep_725_c_27 | Rep_725_c_27_3 | 1717 | 2985 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_725_c_27 | Rep_725_c_27_4 | 3049 | 4182 | - | GT2 |
| CAZyme | Rep_725_c_27 | Rep_725_c_27_5 | 4207 | 5103 | - | GT11 |
| CAZyme | Rep_725_c_27 | Rep_725_c_27_6 | 5122 | 6207 | - | GT2 |
| NULL(UNKNOWN) | Rep_725_c_27 | Rep_725_c_27_7 | 6174 | 7331 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_725_c_27 | Rep_725_c_27_8 | 7777 | 8853 | + | GT2 |
| peptidase | Rep_725_c_27 | Rep_725_c_27_9 | 8933 | 9496 | - | C56.UNW |
| pfam | Rep_725_c_27 | Rep_725_c_27_10 | 9559 | 10599 | - | Biotin_lipoyl | E3_binding |
| CAZyme | Rep_725_c_27 | Rep_725_c_27_11 | 10692 | 11840 | - | CE9 |
| TC | Rep_725_c_27 | Rep_725_c_27_12 | 11862 | 12455 | - | 3.D.1.8.1 |
| pfam | Rep_725_c_27 | Rep_725_c_27_13 | 12612 | 13955 | - | MFS_1 |
| TC | Rep_725_c_27 | Rep_725_c_27_14 | 13960 | 15585 | - | 2.A.114.1.4 |
Gene ID: Rep_725_c_27_2
Type: CAZyme
Location: 347 - 1393 (-)
Type: CAZyme
Location: 347 - 1393 (-)
Gene ID: Rep_725_c_27_3
Type:
Location: 1717 - 2985 (-)
Type:
Location: 1717 - 2985 (-)
Gene ID: Rep_725_c_27_4
Type: CAZyme
Location: 3049 - 4182 (-)
Type: CAZyme
Location: 3049 - 4182 (-)
Gene ID: Rep_725_c_27_5
Type: CAZyme
Location: 4207 - 5103 (-)
Type: CAZyme
Location: 4207 - 5103 (-)
Gene ID: Rep_725_c_27_6
Type: CAZyme
Location: 5122 - 6207 (-)
Type: CAZyme
Location: 5122 - 6207 (-)
Gene ID: Rep_725_c_27_7
Type:
Location: 6174 - 7331 (-)
Type:
Location: 6174 - 7331 (-)
Gene ID: Rep_725_c_27_8
Type: CAZyme
Location: 7777 - 8853 (+)
Type: CAZyme
Location: 7777 - 8853 (+)
Gene ID: Rep_725_c_27_9
Type: peptidase
Location: 8933 - 9496 (-)
Type: peptidase
Location: 8933 - 9496 (-)
Gene ID: Rep_725_c_27_10
Type: pfam
Location: 9559 - 10599 (-)
Type: pfam
Location: 9559 - 10599 (-)
Gene ID: Rep_725_c_27_11
Type: CAZyme
Location: 10692 - 11840 (-)
Type: CAZyme
Location: 10692 - 11840 (-)
Gene ID: Rep_725_c_27_12
Type: TC
Location: 11862 - 12455 (-)
Type: TC
Location: 11862 - 12455 (-)
Gene ID: Rep_725_c_27_13
Type: pfam
Location: 12612 - 13955 (-)
Type: pfam
Location: 12612 - 13955 (-)
Gene ID: Rep_725_c_27_14
Type: TC
Location: 13960 - 15585 (-)
Type: TC
Location: 13960 - 15585 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_725_c_27_14 | vegetarian > vegan | 1.03003 | 0.01684 |