Cluster: Rep_725_CGC17
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_725
- CGC Family ID: CGCFAM_03459
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_725_c_25 | Rep_725_c_25_4 | 4034 | 6037 | - | GH20 |
| NULL(UNKNOWN) | Rep_725_c_25 | Rep_725_c_25_5 | 6271 | 7059 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_725_c_25 | Rep_725_c_25_6 | 7105 | 7740 | - | Peptidase_M15_4 |
| TC | Rep_725_c_25 | Rep_725_c_25_7 | 7917 | 9704 | + | 2.A.49.6.4 |
Gene ID: Rep_725_c_25_4
Type: CAZyme
Location: 4034 - 6037 (-)
Type: CAZyme
Location: 4034 - 6037 (-)
Gene ID: Rep_725_c_25_5
Type:
Location: 6271 - 7059 (+)
Type:
Location: 6271 - 7059 (+)
Gene ID: Rep_725_c_25_6
Type: pfam
Location: 7105 - 7740 (-)
Type: pfam
Location: 7105 - 7740 (-)
Gene ID: Rep_725_c_25_7
Type: TC
Location: 7917 - 9704 (+)
Type: TC
Location: 7917 - 9704 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_725_c_25_4 | vegan > omnivore | 1.51232 | 0.01009 |