Cluster: Rep_725_CGC1
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 7
- Substrate:
- Genome ID: Rep_725
- CGC Family ID: CGCFAM_01284
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_725_c_0 | Rep_725_c_0_63 | 72794 | 73768 | - | GT8 |
| CAZyme | Rep_725_c_0 | Rep_725_c_0_64 | 73790 | 74815 | - | GT2 |
| CAZyme | Rep_725_c_0 | Rep_725_c_0_65 | 74812 | 75786 | - | GT9 |
| pfam | Rep_725_c_0 | Rep_725_c_0_66 | 75808 | 76794 | - | 3Beta_HSD | Epimerase | RmlD_sub_bind | GDP_Man_Dehyd |
| NULL(UNKNOWN) | Rep_725_c_0 | Rep_725_c_0_67 | 76866 | 76970 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_725_c_0 | Rep_725_c_0_68 | 77093 | 78247 | + | GT2 |
| NULL(UNKNOWN) | Rep_725_c_0 | Rep_725_c_0_69 | 78275 | 79084 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_725_c_0 | Rep_725_c_0_70 | 79364 | 80551 | + | GT4 |
| CAZyme | Rep_725_c_0 | Rep_725_c_0_71 | 80656 | 81654 | + | GT10 |
| CAZyme | Rep_725_c_0 | Rep_725_c_0_72 | 81874 | 82905 | + | GT10 |
| NULL(UNKNOWN) | Rep_725_c_0 | Rep_725_c_0_73 | 82943 | 83455 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | Rep_725_c_0 | Rep_725_c_0_74 | 83544 | 83777 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_725_c_0 | Rep_725_c_0_75 | 83903 | 85768 | - | 2.A.47.4.8 |
Gene ID: Rep_725_c_0_63
Type: CAZyme
Location: 72794 - 73768 (-)
Type: CAZyme
Location: 72794 - 73768 (-)
Gene ID: Rep_725_c_0_64
Type: CAZyme
Location: 73790 - 74815 (-)
Type: CAZyme
Location: 73790 - 74815 (-)
Gene ID: Rep_725_c_0_65
Type: CAZyme
Location: 74812 - 75786 (-)
Type: CAZyme
Location: 74812 - 75786 (-)
Gene ID: Rep_725_c_0_66
Type: pfam
Location: 75808 - 76794 (-)
Type: pfam
Location: 75808 - 76794 (-)
Gene ID: Rep_725_c_0_67
Type:
Location: 76866 - 76970 (-)
Type:
Location: 76866 - 76970 (-)
Gene ID: Rep_725_c_0_68
Type: CAZyme
Location: 77093 - 78247 (+)
Type: CAZyme
Location: 77093 - 78247 (+)
Gene ID: Rep_725_c_0_69
Type:
Location: 78275 - 79084 (+)
Type:
Location: 78275 - 79084 (+)
Gene ID: Rep_725_c_0_70
Type: CAZyme
Location: 79364 - 80551 (+)
Type: CAZyme
Location: 79364 - 80551 (+)
Gene ID: Rep_725_c_0_71
Type: CAZyme
Location: 80656 - 81654 (+)
Type: CAZyme
Location: 80656 - 81654 (+)
Gene ID: Rep_725_c_0_72
Type: CAZyme
Location: 81874 - 82905 (+)
Type: CAZyme
Location: 81874 - 82905 (+)
Gene ID: Rep_725_c_0_73
Type:
Location: 82943 - 83455 (-)
Type:
Location: 82943 - 83455 (-)
Gene ID: Rep_725_c_0_74
Type:
Location: 83544 - 83777 (-)
Type:
Location: 83544 - 83777 (-)
Gene ID: Rep_725_c_0_75
Type: TC
Location: 83903 - 85768 (-)
Type: TC
Location: 83903 - 85768 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_725_c_0_74 | vegetarian > vegan | 1.26689 | 0.01684 |