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Cluster: Rep_719_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_719_c_0 Rep_719_c_0_225 288739 289893 + GT2
CAZyme Rep_719_c_0 Rep_719_c_0_226 289880 290986 + GT2
peptidase Rep_719_c_0 Rep_719_c_0_227 291059 291622 - C56.UNW
pfam Rep_719_c_0 Rep_719_c_0_228 291674 292717 - Biotin_lipoyl | E3_binding
CAZyme Rep_719_c_0 Rep_719_c_0_229 292802 293950 - CE9
NULL(UNKNOWN) Rep_719_c_0 Rep_719_c_0_230 294013 294270 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_719_c_0 Rep_719_c_0_231 294302 294916 - 3.D.1.8.1
pfam Rep_719_c_0 Rep_719_c_0_232 295056 296399 - MFS_1
TC Rep_719_c_0 Rep_719_c_0_233 296679 298148 - 2.A.114.1.4
CAZyme Rep_719_c_0 Rep_719_c_0_234 298779 299816 + GT8
CAZyme Rep_719_c_0 Rep_719_c_0_235 299852 300937 + GT8
Gene ID: Rep_719_c_0_225
Type: CAZyme
Location: 288739 - 289893 (+)
Gene ID: Rep_719_c_0_226
Type: CAZyme
Location: 289880 - 290986 (+)
Gene ID: Rep_719_c_0_227
Type: peptidase
Location: 291059 - 291622 (-)
Gene ID: Rep_719_c_0_228
Type: pfam
Location: 291674 - 292717 (-)
Gene ID: Rep_719_c_0_229
Type: CAZyme
Location: 292802 - 293950 (-)
Gene ID: Rep_719_c_0_230
Type:
Location: 294013 - 294270 (-)
Gene ID: Rep_719_c_0_231
Type: TC
Location: 294302 - 294916 (-)
Gene ID: Rep_719_c_0_232
Type: pfam
Location: 295056 - 296399 (-)
Gene ID: Rep_719_c_0_233
Type: TC
Location: 296679 - 298148 (-)
Gene ID: Rep_719_c_0_234
Type: CAZyme
Location: 298779 - 299816 (+)
Gene ID: Rep_719_c_0_235
Type: CAZyme
Location: 299852 - 300937 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_719_c_0_231 vegetarian > omnivore 1.53381 0.04607
Rep_719_c_0_231 vegetarian > vegan 1.46808 0.03217

🧭 Explore Read Mapping of CGC

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