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Cluster: Rep_719_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_719_c_0 Rep_719_c_0_199 254531 254773 - 3.D.1.6.4
pfam Rep_719_c_0 Rep_719_c_0_200 254909 255637 - Pan_kinase
CAZyme Rep_719_c_0 Rep_719_c_0_201 255643 256767 - GT28
pfam Rep_719_c_0 Rep_719_c_0_202 256956 257900 + Formyl_trans_N | Formyl_trans_C
pfam Rep_719_c_0 Rep_719_c_0_203 257901 259907 + UvrD-helicase | AAA_19 | UvrD_C | UvrD_C_2
TC Rep_719_c_0 Rep_719_c_0_204 261100 263400 - 2.A.21.3.2
pfam Rep_719_c_0 Rep_719_c_0_205 263413 264591 - GHMP_kinases_N | GHMP_kinases_C | GalKase_gal_bdg
TC Rep_719_c_0 Rep_719_c_0_206 264813 266189 - 9.B.18.1.2
Gene ID: Rep_719_c_0_199
Type: TC
Location: 254531 - 254773 (-)
Gene ID: Rep_719_c_0_200
Type: pfam
Location: 254909 - 255637 (-)
Gene ID: Rep_719_c_0_201
Type: CAZyme
Location: 255643 - 256767 (-)
Gene ID: Rep_719_c_0_202
Type: pfam
Location: 256956 - 257900 (+)
Gene ID: Rep_719_c_0_203
Type: pfam
Location: 257901 - 259907 (+)
Gene ID: Rep_719_c_0_204
Type: TC
Location: 261100 - 263400 (-)
Gene ID: Rep_719_c_0_205
Type: pfam
Location: 263413 - 264591 (-)
Gene ID: Rep_719_c_0_206
Type: TC
Location: 264813 - 266189 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_719_c_0_200 vegetarian > vegan 1.03992 0.03217

🧭 Explore Read Mapping of CGC

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