Cluster: Rep_719_CGC34
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_719
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_719_c_18 | Rep_719_c_18_30 | 21518 | 22168 | - | 1.A.30.3.3 |
| pfam | Rep_719_c_18 | Rep_719_c_18_31 | 22224 | 22949 | - | UbiA |
| pfam | Rep_719_c_18 | Rep_719_c_18_32 | 23142 | 24263 | + | Rotamase | Rotamase_2 | Rotamase_3 | SurA_N_2 | SurA_N_3 |
| CAZyme | Rep_719_c_18 | Rep_719_c_18_33 | 24563 | 27523 | + | CBM32 | GH2 |
Gene ID: Rep_719_c_18_30
Type: TC
Location: 21518 - 22168 (-)
Type: TC
Location: 21518 - 22168 (-)
Gene ID: Rep_719_c_18_31
Type: pfam
Location: 22224 - 22949 (-)
Type: pfam
Location: 22224 - 22949 (-)
Gene ID: Rep_719_c_18_32
Type: pfam
Location: 23142 - 24263 (+)
Type: pfam
Location: 23142 - 24263 (+)
Gene ID: Rep_719_c_18_33
Type: CAZyme
Location: 24563 - 27523 (+)
Type: CAZyme
Location: 24563 - 27523 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Species
Akkermansia biwaensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_719_c_18_30 | vegetarian > omnivore | 1.10433 | 0.03371 |
| Rep_719_c_18_31 | vegetarian > omnivore | 1.24164 | 0.04607 |
| Rep_719_c_18_31 | vegetarian > vegan | 1.19596 | 0.03217 |