dbCAN Logo

Cluster: Rep_719_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_719_c_0 Rep_719_c_0_159 209916 211472 + GH20
pfam Rep_719_c_0 Rep_719_c_0_160 211592 213007 + tRNA-synt_1e | DALR_2 | CysS_C
pfam Rep_719_c_0 Rep_719_c_0_161 213321 214250 + Laminin_G_3
TC Rep_719_c_0 Rep_719_c_0_162 214449 215336 + 2.A.7.3.36
NULL(UNKNOWN) Rep_719_c_0 Rep_719_c_0_163 215527 216039 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_719_c_0 Rep_719_c_0_164 216143 218119 - 3.A.1.121.4
TC Rep_719_c_0 Rep_719_c_0_165 218208 218711 - 3.D.1.8.1
Gene ID: Rep_719_c_0_159
Type: CAZyme
Location: 209916 - 211472 (+)
Gene ID: Rep_719_c_0_160
Type: pfam
Location: 211592 - 213007 (+)
Gene ID: Rep_719_c_0_161
Type: pfam
Location: 213321 - 214250 (+)
Gene ID: Rep_719_c_0_162
Type: TC
Location: 214449 - 215336 (+)
Gene ID: Rep_719_c_0_163
Type:
Location: 215527 - 216039 (+)
Gene ID: Rep_719_c_0_164
Type: TC
Location: 216143 - 218119 (-)
Gene ID: Rep_719_c_0_165
Type: TC
Location: 218208 - 218711 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_719_c_0_164 vegan > omnivore 1.33275 0.02117

🧭 Explore Read Mapping of CGC

← Back to Cluster List