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Cluster: Rep_719_CGC25

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_719_c_9 Rep_719_c_9_17 25788 27440 + GH29
pfam Rep_719_c_9 Rep_719_c_9_18 27465 29777 + BRCT | DNA_ligase_aden | DNA_ligase_ZBD | DNA_ligase_OB | PTCB-BRCT | Nlig-Ia
TC Rep_719_c_9 Rep_719_c_9_19 30195 30803 + 4.F.1.1.8
TC Rep_719_c_9 Rep_719_c_9_20 31251 32492 + 1.I.1.1.3
NULL(UNKNOWN) Rep_719_c_9 Rep_719_c_9_21 32653 33258 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_719_c_9 Rep_719_c_9_22 33795 35240 + GH109
CAZyme Rep_719_c_9 Rep_719_c_9_23 35607 38000 - GH95
NULL(UNKNOWN) Rep_719_c_9 Rep_719_c_9_24 38223 39365 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) Rep_719_c_9 Rep_719_c_9_25 39362 40321 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_719_c_9 Rep_719_c_9_26 40415 41566 - 2.A.1.26.1
Gene ID: Rep_719_c_9_17
Type: CAZyme
Location: 25788 - 27440 (+)
Gene ID: Rep_719_c_9_18
Type: pfam
Location: 27465 - 29777 (+)
Gene ID: Rep_719_c_9_19
Type: TC
Location: 30195 - 30803 (+)
Gene ID: Rep_719_c_9_20
Type: TC
Location: 31251 - 32492 (+)
Gene ID: Rep_719_c_9_21
Type:
Location: 32653 - 33258 (+)
Gene ID: Rep_719_c_9_22
Type: CAZyme
Location: 33795 - 35240 (+)
Gene ID: Rep_719_c_9_23
Type: CAZyme
Location: 35607 - 38000 (-)
Gene ID: Rep_719_c_9_24
Type:
Location: 38223 - 39365 (+)
Gene ID: Rep_719_c_9_25
Type:
Location: 39362 - 40321 (+)
Gene ID: Rep_719_c_9_26
Type: TC
Location: 40415 - 41566 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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