Cluster: Rep_719_CGC24
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 7
- Substrate:
- Genome ID: Rep_719
- CGC Family ID: CGCFAM_01284
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_719_c_8 | Rep_719_c_8_28 | 26593 | 27570 | - | GT8 |
| CAZyme | Rep_719_c_8 | Rep_719_c_8_29 | 27589 | 28614 | - | GT2 |
| CAZyme | Rep_719_c_8 | Rep_719_c_8_30 | 28642 | 29568 | - | GT9 |
| pfam | Rep_719_c_8 | Rep_719_c_8_31 | 29588 | 30574 | - | 3Beta_HSD | Epimerase | RmlD_sub_bind | GDP_Man_Dehyd |
| CAZyme | Rep_719_c_8 | Rep_719_c_8_32 | 30877 | 32007 | + | GT2 |
| NULL(UNKNOWN) | Rep_719_c_8 | Rep_719_c_8_33 | 32087 | 32860 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_719_c_8 | Rep_719_c_8_34 | 33034 | 34320 | + | GT4 |
| CAZyme | Rep_719_c_8 | Rep_719_c_8_35 | 34411 | 35409 | + | GT10 |
| CAZyme | Rep_719_c_8 | Rep_719_c_8_36 | 35581 | 36843 | + | GT10 |
| NULL(UNKNOWN) | Rep_719_c_8 | Rep_719_c_8_37 | 36885 | 37484 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | Rep_719_c_8 | Rep_719_c_8_38 | 37484 | 37723 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_719_c_8 | Rep_719_c_8_39 | 37841 | 39706 | - | 2.A.47.4.8 |
Gene ID: Rep_719_c_8_28
Type: CAZyme
Location: 26593 - 27570 (-)
Type: CAZyme
Location: 26593 - 27570 (-)
Gene ID: Rep_719_c_8_29
Type: CAZyme
Location: 27589 - 28614 (-)
Type: CAZyme
Location: 27589 - 28614 (-)
Gene ID: Rep_719_c_8_30
Type: CAZyme
Location: 28642 - 29568 (-)
Type: CAZyme
Location: 28642 - 29568 (-)
Gene ID: Rep_719_c_8_31
Type: pfam
Location: 29588 - 30574 (-)
Type: pfam
Location: 29588 - 30574 (-)
Gene ID: Rep_719_c_8_32
Type: CAZyme
Location: 30877 - 32007 (+)
Type: CAZyme
Location: 30877 - 32007 (+)
Gene ID: Rep_719_c_8_33
Type:
Location: 32087 - 32860 (+)
Type:
Location: 32087 - 32860 (+)
Gene ID: Rep_719_c_8_34
Type: CAZyme
Location: 33034 - 34320 (+)
Type: CAZyme
Location: 33034 - 34320 (+)
Gene ID: Rep_719_c_8_35
Type: CAZyme
Location: 34411 - 35409 (+)
Type: CAZyme
Location: 34411 - 35409 (+)
Gene ID: Rep_719_c_8_36
Type: CAZyme
Location: 35581 - 36843 (+)
Type: CAZyme
Location: 35581 - 36843 (+)
Gene ID: Rep_719_c_8_37
Type:
Location: 36885 - 37484 (-)
Type:
Location: 36885 - 37484 (-)
Gene ID: Rep_719_c_8_38
Type:
Location: 37484 - 37723 (-)
Type:
Location: 37484 - 37723 (-)
Gene ID: Rep_719_c_8_39
Type: TC
Location: 37841 - 39706 (-)
Type: TC
Location: 37841 - 39706 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Species
Akkermansia biwaensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_719_c_8_33 | vegetarian > vegan | 1.01837 | 0.03217 |
| Rep_719_c_8_38 | vegetarian > vegan | 1.20955 | 0.03217 |