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Cluster: Rep_719_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_719_c_5 Rep_719_c_5_62 88429 90063 - 2.A.111.2.1
CAZyme Rep_719_c_5 Rep_719_c_5_63 90236 91690 + CE4
TC Rep_719_c_5 Rep_719_c_5_64 92344 93588 + 3.D.1.5.1
TC Rep_719_c_5 Rep_719_c_5_65 93637 94218 + 3.D.1.2.1
TC Rep_719_c_5 Rep_719_c_5_66 94249 95649 + 3.D.1.3.1
TC Rep_719_c_5 Rep_719_c_5_67 95698 97434 + 3.D.1.6.2
TC Rep_719_c_5 Rep_719_c_5_68 97470 98738 + 3.D.1.5.1
STP Rep_719_c_5 Rep_719_c_5_69 98769 99332 + Fer4 | Fer4
TC Rep_719_c_5 Rep_719_c_5_70 99369 100283 + 3.D.1.1.1
TC Rep_719_c_5 Rep_719_c_5_71 100311 100628 + 3.D.1.3.1
TC Rep_719_c_5 Rep_719_c_5_72 100653 102485 + 3.D.1.3.1
TC Rep_719_c_5 Rep_719_c_5_73 102507 103931 + 3.D.1.5.1
TC Rep_719_c_5 Rep_719_c_5_74 103978 105360 + 3.D.1.5.1
Gene ID: Rep_719_c_5_62
Type: TC
Location: 88429 - 90063 (-)
Gene ID: Rep_719_c_5_63
Type: CAZyme
Location: 90236 - 91690 (+)
Gene ID: Rep_719_c_5_64
Type: TC
Location: 92344 - 93588 (+)
Gene ID: Rep_719_c_5_65
Type: TC
Location: 93637 - 94218 (+)
Gene ID: Rep_719_c_5_66
Type: TC
Location: 94249 - 95649 (+)
Gene ID: Rep_719_c_5_67
Type: TC
Location: 95698 - 97434 (+)
Gene ID: Rep_719_c_5_68
Type: TC
Location: 97470 - 98738 (+)
Gene ID: Rep_719_c_5_69
Type: STP
Location: 98769 - 99332 (+)
Gene ID: Rep_719_c_5_70
Type: TC
Location: 99369 - 100283 (+)
Gene ID: Rep_719_c_5_71
Type: TC
Location: 100311 - 100628 (+)
Gene ID: Rep_719_c_5_72
Type: TC
Location: 100653 - 102485 (+)
Gene ID: Rep_719_c_5_73
Type: TC
Location: 102507 - 103931 (+)
Gene ID: Rep_719_c_5_74
Type: TC
Location: 103978 - 105360 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_719_c_5_63 vegetarian > vegan 1.00961 0.03217
Rep_719_c_5_71 vegetarian > omnivore 1.44479 0.04607
Rep_719_c_5_71 vegetarian > vegan 1.29320 0.03217

🧭 Explore Read Mapping of CGC

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