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Cluster: Rep_719_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_719_c_4 Rep_719_c_4_54 57096 59648 - GH89
TC Rep_719_c_4 Rep_719_c_4_55 59776 62370 - 3.A.9.1.2
pfam Rep_719_c_4 Rep_719_c_4_56 62401 63456 - ATP-gua_Ptrans
pfam Rep_719_c_4 Rep_719_c_4_57 63462 63998 - UVR
TC Rep_719_c_4 Rep_719_c_4_58 64066 64926 - 3.A.1.15.1
TC Rep_719_c_4 Rep_719_c_4_59 64946 65731 - 3.A.1.15.12
NULL(UNKNOWN) Rep_719_c_4 Rep_719_c_4_60 65722 66156 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_719_c_4 Rep_719_c_4_61 66153 67100 - 3.A.1.15.13
pfam Rep_719_c_4 Rep_719_c_4_62 67159 69774 - DUF2339
pfam Rep_719_c_4 Rep_719_c_4_63 70059 73124 + Chlam_PMP | Autotransporter
CAZyme Rep_719_c_4 Rep_719_c_4_64 73338 76199 + GH84
Gene ID: Rep_719_c_4_54
Type: CAZyme
Location: 57096 - 59648 (-)
Gene ID: Rep_719_c_4_55
Type: TC
Location: 59776 - 62370 (-)
Gene ID: Rep_719_c_4_56
Type: pfam
Location: 62401 - 63456 (-)
Gene ID: Rep_719_c_4_57
Type: pfam
Location: 63462 - 63998 (-)
Gene ID: Rep_719_c_4_58
Type: TC
Location: 64066 - 64926 (-)
Gene ID: Rep_719_c_4_59
Type: TC
Location: 64946 - 65731 (-)
Gene ID: Rep_719_c_4_60
Type:
Location: 65722 - 66156 (-)
Gene ID: Rep_719_c_4_61
Type: TC
Location: 66153 - 67100 (-)
Gene ID: Rep_719_c_4_62
Type: pfam
Location: 67159 - 69774 (-)
Gene ID: Rep_719_c_4_63
Type: pfam
Location: 70059 - 73124 (+)
Gene ID: Rep_719_c_4_64
Type: CAZyme
Location: 73338 - 76199 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_719_c_4_61 vegetarian > omnivore 1.78946 0.04607
Rep_719_c_4_61 vegetarian > vegan 1.71777 0.03217

🧭 Explore Read Mapping of CGC

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