Cluster: Rep_719_CGC15
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_719
- CGC Family ID: CGCFAM_03330
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_719_c_4 | Rep_719_c_4_1 | 1 | 525 | - | 1.B.17.3.5 |
| TC | Rep_719_c_4 | Rep_719_c_4_2 | 557 | 1921 | - | 3.A.1.122.1 |
| TC | Rep_719_c_4 | Rep_719_c_4_3 | 1918 | 2622 | - | 3.A.1.122.2 |
| pfam | Rep_719_c_4 | Rep_719_c_4_4 | 2682 | 4103 | - | HlyD_3 | HlyD_D23 |
| NULL(UNKNOWN) | Rep_719_c_4 | Rep_719_c_4_5 | 4992 | 6626 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_719_c_4 | Rep_719_c_4_6 | 6644 | 8920 | - | GT31 | GT32 |
Gene ID: Rep_719_c_4_1
Type: TC
Location: 1 - 525 (-)
Type: TC
Location: 1 - 525 (-)
Gene ID: Rep_719_c_4_2
Type: TC
Location: 557 - 1921 (-)
Type: TC
Location: 557 - 1921 (-)
Gene ID: Rep_719_c_4_3
Type: TC
Location: 1918 - 2622 (-)
Type: TC
Location: 1918 - 2622 (-)
Gene ID: Rep_719_c_4_4
Type: pfam
Location: 2682 - 4103 (-)
Type: pfam
Location: 2682 - 4103 (-)
Gene ID: Rep_719_c_4_5
Type:
Location: 4992 - 6626 (-)
Type:
Location: 4992 - 6626 (-)
Gene ID: Rep_719_c_4_6
Type: CAZyme
Location: 6644 - 8920 (-)
Type: CAZyme
Location: 6644 - 8920 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Verrucomicrobiota
Class
Verrucomicrobiae
Order
Verrucomicrobiales
Family
Akkermansiaceae
Genus
Akkermansia
Species
Akkermansia biwaensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.