Cluster: Rep_695_CGC6
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_695
- CGC Family ID: CGCFAM_02253
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_695_c_0 | Rep_695_c_0_1057 | 1124409 | 1126211 | - | 3.A.1.106.1 |
| NULL(UNKNOWN) | Rep_695_c_0 | Rep_695_c_0_1058 | 1126467 | 1127588 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_695_c_0 | Rep_695_c_0_1059 | 1127937 | 1128743 | + | GT9 |
| CAZyme | Rep_695_c_0 | Rep_695_c_0_1060 | 1128769 | 1129539 | + | GT2 |
| CAZyme | Rep_695_c_0 | Rep_695_c_0_1061 | 1129556 | 1130608 | + | GT2 |
| pfam | Rep_695_c_0 | Rep_695_c_0_1062 | 1130610 | 1134047 | - | PHP | DNA_pol3_alpha | HHH_6 | DNA_pol3_finger |
| TC | Rep_695_c_0 | Rep_695_c_0_1063 | 1134157 | 1135821 | - | 3.A.1.120.6 |
| CAZyme | Rep_695_c_0 | Rep_695_c_0_1064 | 1136043 | 1137593 | + | GH23 |
Gene ID: Rep_695_c_0_1057
Type: TC
Location: 1124409 - 1126211 (-)
Type: TC
Location: 1124409 - 1126211 (-)
Gene ID: Rep_695_c_0_1058
Type:
Location: 1126467 - 1127588 (-)
Type:
Location: 1126467 - 1127588 (-)
Gene ID: Rep_695_c_0_1059
Type: CAZyme
Location: 1127937 - 1128743 (+)
Type: CAZyme
Location: 1127937 - 1128743 (+)
Gene ID: Rep_695_c_0_1060
Type: CAZyme
Location: 1128769 - 1129539 (+)
Type: CAZyme
Location: 1128769 - 1129539 (+)
Gene ID: Rep_695_c_0_1061
Type: CAZyme
Location: 1129556 - 1130608 (+)
Type: CAZyme
Location: 1129556 - 1130608 (+)
Gene ID: Rep_695_c_0_1062
Type: pfam
Location: 1130610 - 1134047 (-)
Type: pfam
Location: 1130610 - 1134047 (-)
Gene ID: Rep_695_c_0_1063
Type: TC
Location: 1134157 - 1135821 (-)
Type: TC
Location: 1134157 - 1135821 (-)
Gene ID: Rep_695_c_0_1064
Type: CAZyme
Location: 1136043 - 1137593 (+)
Type: CAZyme
Location: 1136043 - 1137593 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Duodenibacillus
Species
Duodenibacillus massiliensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_695_c_0_1059 | vegetarian > omnivore | 3.70626 | 0.01332 |
| Rep_695_c_0_1059 | vegetarian > vegan | 17.81799 | 0.01332 |
| Rep_695_c_0_1060 | vegetarian > omnivore | 3.93177 | 0.01332 |
| Rep_695_c_0_1060 | vegetarian > vegan | 18.10933 | 0.01332 |
| Rep_695_c_0_1064 | vegetarian > omnivore | 1.32822 | 0.01332 |
| Rep_695_c_0_1064 | vegetarian > vegan | 1.76096 | 0.01332 |