Cluster: Rep_695_CGC10
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_695
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_695_c_0 | Rep_695_c_0_1989 | 2111240 | 2112940 | + | 1.B.33.2.4 |
| TC | Rep_695_c_0 | Rep_695_c_0_1990 | 2112934 | 2116755 | + | 9.B.22.1.2 |
| pfam | Rep_695_c_0 | Rep_695_c_0_1991 | 2116959 | 2118305 | + | Tubulin | FtsZ_C |
| CAZyme | Rep_695_c_0 | Rep_695_c_0_1992 | 2118311 | 2119234 | + | CE11 |
| NULL(UNKNOWN) | Rep_695_c_0 | Rep_695_c_0_1993 | 2119239 | 2119790 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_695_c_0 | Rep_695_c_0_1994 | 2119857 | 2122607 | + | 3.A.5.1.1 |
Gene ID: Rep_695_c_0_1989
Type: TC
Location: 2111240 - 2112940 (+)
Type: TC
Location: 2111240 - 2112940 (+)
Gene ID: Rep_695_c_0_1990
Type: TC
Location: 2112934 - 2116755 (+)
Type: TC
Location: 2112934 - 2116755 (+)
Gene ID: Rep_695_c_0_1991
Type: pfam
Location: 2116959 - 2118305 (+)
Type: pfam
Location: 2116959 - 2118305 (+)
Gene ID: Rep_695_c_0_1992
Type: CAZyme
Location: 2118311 - 2119234 (+)
Type: CAZyme
Location: 2118311 - 2119234 (+)
Gene ID: Rep_695_c_0_1993
Type:
Location: 2119239 - 2119790 (-)
Type:
Location: 2119239 - 2119790 (-)
Gene ID: Rep_695_c_0_1994
Type: TC
Location: 2119857 - 2122607 (+)
Type: TC
Location: 2119857 - 2122607 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Duodenibacillus
Species
Duodenibacillus massiliensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_695_c_0_1989 | vegetarian > omnivore | 3.37387 | 0.01332 |
| Rep_695_c_0_1989 | vegetarian > vegan | 3.99331 | 0.01332 |
| Rep_695_c_0_1990 | vegetarian > omnivore | 9.64339 | 0.01332 |
| Rep_695_c_0_1990 | vegetarian > vegan | 4.67080 | 0.01332 |
| Rep_695_c_0_1992 | vegetarian > omnivore | 1.54641 | 0.01332 |
| Rep_695_c_0_1992 | vegetarian > vegan | 3.96388 | 0.01332 |