Cluster: Rep_68_CGC35
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 2
- Substrate: pectin/galactan
- Genome ID: Rep_68
- CGC Family ID: CGCFAM_00031
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_68_c_93 | Rep_68_c_93_1 | 201 | 1499 | + | 9.B.10.1.1 |
| pfam | Rep_68_c_93 | Rep_68_c_93_2 | 1585 | 3765 | + | Gln-synt_C | GSIII_N | Gln-synt_C-ter |
| TC | Rep_68_c_93 | Rep_68_c_93_3 | 3838 | 5493 | - | 4.C.1.1.4 |
| STP | Rep_68_c_93 | Rep_68_c_93_4 | 5693 | 6526 | + | HTH_18 |
| pfam | Rep_68_c_93 | Rep_68_c_93_5 | 6638 | 7612 | - | DUF362 |
| CAZyme | Rep_68_c_93 | Rep_68_c_93_6 | 7834 | 11220 | - | GH2 | GH53 |
| CAZyme | Rep_68_c_93 | Rep_68_c_93_7 | 11269 | 12339 | - | GH53 |
| pfam | Rep_68_c_93 | Rep_68_c_93_8 | 12351 | 14054 | - | SusE | DUF5111 | DUF5114 |
| TC | Rep_68_c_93 | Rep_68_c_93_9 | 14066 | 15628 | - | 8.A.46.1.1 |
| TC | Rep_68_c_93 | Rep_68_c_93_10 | 15665 | 18670 | - | 1.B.14.6.1 |
| NULL(UNKNOWN) | Rep_68_c_93 | Rep_68_c_93_11 | 18765 | 18860 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | Rep_68_c_93 | Rep_68_c_93_12 | 18868 | 22779 | - | HTH_AraC |
| TC | Rep_68_c_93 | Rep_68_c_93_13 | 22781 | 23155 | - | 9.B.55.2.1 |
Gene ID: Rep_68_c_93_1
Type: TC
Location: 201 - 1499 (+)
Type: TC
Location: 201 - 1499 (+)
Gene ID: Rep_68_c_93_2
Type: pfam
Location: 1585 - 3765 (+)
Type: pfam
Location: 1585 - 3765 (+)
Gene ID: Rep_68_c_93_3
Type: TC
Location: 3838 - 5493 (-)
Type: TC
Location: 3838 - 5493 (-)
Gene ID: Rep_68_c_93_4
Type: STP
Location: 5693 - 6526 (+)
Type: STP
Location: 5693 - 6526 (+)
Gene ID: Rep_68_c_93_5
Type: pfam
Location: 6638 - 7612 (-)
Type: pfam
Location: 6638 - 7612 (-)
Gene ID: Rep_68_c_93_6
Type: CAZyme
Location: 7834 - 11220 (-)
Type: CAZyme
Location: 7834 - 11220 (-)
Gene ID: Rep_68_c_93_7
Type: CAZyme
Location: 11269 - 12339 (-)
Type: CAZyme
Location: 11269 - 12339 (-)
Gene ID: Rep_68_c_93_8
Type: pfam
Location: 12351 - 14054 (-)
Type: pfam
Location: 12351 - 14054 (-)
Gene ID: Rep_68_c_93_9
Type: TC
Location: 14066 - 15628 (-)
Type: TC
Location: 14066 - 15628 (-)
Gene ID: Rep_68_c_93_10
Type: TC
Location: 15665 - 18670 (-)
Type: TC
Location: 15665 - 18670 (-)
Gene ID: Rep_68_c_93_11
Type:
Location: 18765 - 18860 (-)
Type:
Location: 18765 - 18860 (-)
Gene ID: Rep_68_c_93_12
Type: TF
Location: 18868 - 22779 (-)
Type: TF
Location: 18868 - 22779 (-)
Gene ID: Rep_68_c_93_13
Type: TC
Location: 22781 - 23155 (-)
Type: TC
Location: 22781 - 23155 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
UBA932
Genus
Cryptobacteroides
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.