Cluster: Rep_648_CGC8
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_648
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_648_c_44 | Rep_648_c_44_34 | 35180 | 35896 | + | 2.A.64.1.3 |
| pfam | Rep_648_c_44 | Rep_648_c_44_35 | 35898 | 37016 | + | Metallophos | Metallophos_2 |
| NULL(UNKNOWN) | Rep_648_c_44 | Rep_648_c_44_36 | 37139 | 37624 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_648_c_44 | Rep_648_c_44_37 | 38323 | 40122 | + | 2.A.21.9.2 |
| STP | Rep_648_c_44 | Rep_648_c_44_38 | 40119 | 41156 | + | SBP_bac_3 |
| STP | Rep_648_c_44 | Rep_648_c_44_39 | 41306 | 42760 | - | Peptidase_M23 |
| CAZyme | Rep_648_c_44 | Rep_648_c_44_40 | 42946 | 43896 | + | CE11 |
| pfam | Rep_648_c_44 | Rep_648_c_44_41 | 44093 | 46600 | + | Flg_new |
| TC | Rep_648_c_44 | Rep_648_c_44_42 | 47036 | 47755 | + | 1.A.14.2.2 |
| pfam | Rep_648_c_44 | Rep_648_c_44_43 | 47765 | 48373 | + | Thioredoxin_2 | Thioredoxin_4 |
| pfam | Rep_648_c_44 | Rep_648_c_44_44 | 48373 | 48660 | + | ATPase_gene1 |
| TC | Rep_648_c_44 | Rep_648_c_44_45 | 48664 | 49386 | + | 3.A.2.1.7 |
Gene ID: Rep_648_c_44_34
Type: TC
Location: 35180 - 35896 (+)
Type: TC
Location: 35180 - 35896 (+)
Gene ID: Rep_648_c_44_35
Type: pfam
Location: 35898 - 37016 (+)
Type: pfam
Location: 35898 - 37016 (+)
Gene ID: Rep_648_c_44_36
Type:
Location: 37139 - 37624 (-)
Type:
Location: 37139 - 37624 (-)
Gene ID: Rep_648_c_44_37
Type: TC
Location: 38323 - 40122 (+)
Type: TC
Location: 38323 - 40122 (+)
Gene ID: Rep_648_c_44_38
Type: STP
Location: 40119 - 41156 (+)
Type: STP
Location: 40119 - 41156 (+)
Gene ID: Rep_648_c_44_39
Type: STP
Location: 41306 - 42760 (-)
Type: STP
Location: 41306 - 42760 (-)
Gene ID: Rep_648_c_44_40
Type: CAZyme
Location: 42946 - 43896 (+)
Type: CAZyme
Location: 42946 - 43896 (+)
Gene ID: Rep_648_c_44_41
Type: pfam
Location: 44093 - 46600 (+)
Type: pfam
Location: 44093 - 46600 (+)
Gene ID: Rep_648_c_44_42
Type: TC
Location: 47036 - 47755 (+)
Type: TC
Location: 47036 - 47755 (+)
Gene ID: Rep_648_c_44_43
Type: pfam
Location: 47765 - 48373 (+)
Type: pfam
Location: 47765 - 48373 (+)
Gene ID: Rep_648_c_44_44
Type: pfam
Location: 48373 - 48660 (+)
Type: pfam
Location: 48373 - 48660 (+)
Gene ID: Rep_648_c_44_45
Type: TC
Location: 48664 - 49386 (+)
Type: TC
Location: 48664 - 49386 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
RF32
Family
UBA3637
Genus
RGIG4140
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.