Cluster: Rep_648_CGC2
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_648
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_648_c_13 | Rep_648_c_13_14 | 12525 | 14750 | - | GH77 |
| CAZyme | Rep_648_c_13 | Rep_648_c_13_15 | 14747 | 16804 | - | CBM48 | GH13_11 |
| CAZyme | Rep_648_c_13 | Rep_648_c_13_16 | 16846 | 19062 | - | CBM48 | GH13_9 |
| pfam | Rep_648_c_13 | Rep_648_c_13_17 | 19235 | 20077 | - | Ank | Ank_2 | Ank_3 | Ank_4 |
| TC | Rep_648_c_13 | Rep_648_c_13_18 | 20314 | 22980 | + | 4.A.2.1.17 |
Gene ID: Rep_648_c_13_14
Type: CAZyme
Location: 12525 - 14750 (-)
Type: CAZyme
Location: 12525 - 14750 (-)
Gene ID: Rep_648_c_13_15
Type: CAZyme
Location: 14747 - 16804 (-)
Type: CAZyme
Location: 14747 - 16804 (-)
Gene ID: Rep_648_c_13_16
Type: CAZyme
Location: 16846 - 19062 (-)
Type: CAZyme
Location: 16846 - 19062 (-)
Gene ID: Rep_648_c_13_17
Type: pfam
Location: 19235 - 20077 (-)
Type: pfam
Location: 19235 - 20077 (-)
Gene ID: Rep_648_c_13_18
Type: TC
Location: 20314 - 22980 (+)
Type: TC
Location: 20314 - 22980 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
RF32
Family
UBA3637
Genus
RGIG4140
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.