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Cluster: Rep_63_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_63_c_2 Rep_63_c_2_11 14426 17638 - 1.B.14.6.1
CAZyme Rep_63_c_2 Rep_63_c_2_12 17798 18940 - PL1_2
pfam Rep_63_c_2 Rep_63_c_2_13 19078 19686 - fn3
CAZyme Rep_63_c_2 Rep_63_c_2_14 19708 22140 - GH105 | PL1_2
TF Rep_63_c_2 Rep_63_c_2_15 22140 26453 - HTH_AraC
TC Rep_63_c_2 Rep_63_c_2_16 26663 28024 + 2.A.66.1.47
TC Rep_63_c_2 Rep_63_c_2_17 28041 28844 + 2.A.5.5.5
pfam Rep_63_c_2 Rep_63_c_2_18 28845 29675 - CTP_transf_1
TC Rep_63_c_2 Rep_63_c_2_19 29668 31767 - 3.A.16.1.1
Gene ID: Rep_63_c_2_11
Type: TC
Location: 14426 - 17638 (-)
Gene ID: Rep_63_c_2_12
Type: CAZyme
Location: 17798 - 18940 (-)
Gene ID: Rep_63_c_2_13
Type: pfam
Location: 19078 - 19686 (-)
Gene ID: Rep_63_c_2_14
Type: CAZyme
Location: 19708 - 22140 (-)
Gene ID: Rep_63_c_2_15
Type: TF
Location: 22140 - 26453 (-)
Gene ID: Rep_63_c_2_16
Type: TC
Location: 26663 - 28024 (+)
Gene ID: Rep_63_c_2_17
Type: TC
Location: 28041 - 28844 (+)
Gene ID: Rep_63_c_2_18
Type: pfam
Location: 28845 - 29675 (-)
Gene ID: Rep_63_c_2_19
Type: TC
Location: 29668 - 31767 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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