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Cluster: Rep_63_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_63_c_33 Rep_63_c_33_5 3754 6849 + 2.A.6.2.17
pfam Rep_63_c_33 Rep_63_c_33_6 6846 8234 + OEP | OEP
TC Rep_63_c_33 Rep_63_c_33_7 8288 9250 + 1.A.23.2.1
pfam Rep_63_c_33 Rep_63_c_33_8 9205 9936 - TauE
CAZyme Rep_63_c_33 Rep_63_c_33_9 10011 11363 + GH105
CAZyme Rep_63_c_33 Rep_63_c_33_10 11389 13545 + GH106
pfam Rep_63_c_33 Rep_63_c_33_11 13766 14494 - NTP_transferase | NTP_transf_3
TC Rep_63_c_33 Rep_63_c_33_12 14547 15653 - 3.A.1.105.4
TC Rep_63_c_33 Rep_63_c_33_13 15668 16786 - 3.A.1.105.4
TC Rep_63_c_33 Rep_63_c_33_14 16783 17529 - 3.A.1.105.15
TC Rep_63_c_33 Rep_63_c_33_15 17505 18434 - 3.A.1.105.15
TC Rep_63_c_33 Rep_63_c_33_16 18437 19330 - 3.A.1.105.16
Gene ID: Rep_63_c_33_5
Type: TC
Location: 3754 - 6849 (+)
Gene ID: Rep_63_c_33_6
Type: pfam
Location: 6846 - 8234 (+)
Gene ID: Rep_63_c_33_7
Type: TC
Location: 8288 - 9250 (+)
Gene ID: Rep_63_c_33_8
Type: pfam
Location: 9205 - 9936 (-)
Gene ID: Rep_63_c_33_9
Type: CAZyme
Location: 10011 - 11363 (+)
Gene ID: Rep_63_c_33_10
Type: CAZyme
Location: 11389 - 13545 (+)
Gene ID: Rep_63_c_33_11
Type: pfam
Location: 13766 - 14494 (-)
Gene ID: Rep_63_c_33_12
Type: TC
Location: 14547 - 15653 (-)
Gene ID: Rep_63_c_33_13
Type: TC
Location: 15668 - 16786 (-)
Gene ID: Rep_63_c_33_14
Type: TC
Location: 16783 - 17529 (-)
Gene ID: Rep_63_c_33_15
Type: TC
Location: 17505 - 18434 (-)
Gene ID: Rep_63_c_33_16
Type: TC
Location: 18437 - 19330 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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