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Cluster: Rep_63_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_63_c_24 Rep_63_c_24_3 3260 4621 + 3.D.5.1.1
TC Rep_63_c_24 Rep_63_c_24_4 4626 5741 + 3.D.5.1.1
pfam Rep_63_c_24 Rep_63_c_24_5 5744 6526 + FMN_bind
TC Rep_63_c_24 Rep_63_c_24_6 6530 7132 + 3.D.5.1.1
TC Rep_63_c_24 Rep_63_c_24_7 7145 7759 + 3.D.5.1.1
TC Rep_63_c_24 Rep_63_c_24_8 7778 9052 + 3.D.5.1.1
NULL(UNKNOWN) Rep_63_c_24 Rep_63_c_24_9 9224 10192 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_63_c_24 Rep_63_c_24_10 10260 11144 + GT14
pfam Rep_63_c_24 Rep_63_c_24_11 11141 11980 - RgpF
CAZyme Rep_63_c_24 Rep_63_c_24_12 11987 12874 - GT32
Gene ID: Rep_63_c_24_3
Type: TC
Location: 3260 - 4621 (+)
Gene ID: Rep_63_c_24_4
Type: TC
Location: 4626 - 5741 (+)
Gene ID: Rep_63_c_24_5
Type: pfam
Location: 5744 - 6526 (+)
Gene ID: Rep_63_c_24_6
Type: TC
Location: 6530 - 7132 (+)
Gene ID: Rep_63_c_24_7
Type: TC
Location: 7145 - 7759 (+)
Gene ID: Rep_63_c_24_8
Type: TC
Location: 7778 - 9052 (+)
Gene ID: Rep_63_c_24_9
Type:
Location: 9224 - 10192 (+)
Gene ID: Rep_63_c_24_10
Type: CAZyme
Location: 10260 - 11144 (+)
Gene ID: Rep_63_c_24_11
Type: pfam
Location: 11141 - 11980 (-)
Gene ID: Rep_63_c_24_12
Type: CAZyme
Location: 11987 - 12874 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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